Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H20
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    26   5.7  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    26   5.7  
Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z81518-2|CAE11300.1|  340|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    25   10.0 

>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   KSLLRCGVNNGHLDSDYNVVGHRQ 73
           + LL C ++N H+  DY ++ H Q
Sbjct: 338 EELLACELHNVHIHEDYRLILHEQ 361


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   KSLLRCGVNNGHLDSDYNVVGHRQ 73
           + LL C ++N H+  DY ++ H Q
Sbjct: 340 EELLACELHNVHIHEDYRLILHEQ 363


>Z81518-3|CAB04215.3|  315|Caenorhabditis elegans Hypothetical
           protein F28D9.2b protein.
          Length = 315

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 178 IVTILLFIAVNIFEPFGPPSDYVIKFSTR 92
           I+  LL I   I E F PPS +V + STR
Sbjct: 283 ILEKLLIIPYKIAETFTPPSLHVYQSSTR 311


>Z81518-2|CAE11300.1|  340|Caenorhabditis elegans Hypothetical
           protein F28D9.2a protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 178 IVTILLFIAVNIFEPFGPPSDYVIKFSTR 92
           I+  LL I   I E F PPS +V + STR
Sbjct: 308 ILEKLLIIPYKIAETFTPPSLHVYQSSTR 336


>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 17   CGVNNGHLDSDYNVVGHRQLMATDSPGRKLY 109
            C      L  DY V+GH   + +DS GR+ Y
Sbjct: 1285 CTPGEKTLKRDYYVLGHEDGLNSDSYGRQNY 1315


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 17   CGVNNGHLDSDYNVVGHRQLMATDSPGRKLY 109
            C      L  DY V+GH   + +DS GR+ Y
Sbjct: 1285 CTPGEKTLKRDYYVLGHEDGLNSDSYGRQNY 1315


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +3

Query: 177  ILFEDDG*MMDDGYLS*YKI*YAIICLIIVSKFHVFFYRNNRTSLFKK 320
            ++F DD    D G++  + +  AII + IV    +F  R+NR ++F++
Sbjct: 2074 VIFSDD----DSGWIKSFVV-LAIILVTIVIVVGIFANRSNRFAVFRQ 2116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,186,254
Number of Sequences: 27780
Number of extensions: 134782
Number of successful extensions: 226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)