Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H20
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   3.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   6.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 41  DSDYNVVGHRQLMATDSPGRKLYNIIRRWP 130
           DSDY    + + +   S  RKL NI+   P
Sbjct: 201 DSDYTDKSNEKKIPKSSGWRKLRNIVHWTP 230


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 184 NRIVTILLFIAVNIF 140
           +RIV  L F+A+N+F
Sbjct: 427 SRIVFPLFFLAINVF 441


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 178 IVTILLFIAVNIFEPF 131
           I+ +++FI  NI+E F
Sbjct: 410 IIMLIIFIPRNIYENF 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,945
Number of Sequences: 438
Number of extensions: 2053
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)