Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H18
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 209 HNILSTIGSFPEKFAQEIWIKIDIYFRAARCRCLF 105
           H +    G FP +   ++W+ +      A C  LF
Sbjct: 336 HMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALF 370


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 209 HNILSTIGSFPEKFAQEIWIKIDIYFRAARCRCLF 105
           H +    G FP +   ++W+ +      A C  LF
Sbjct: 304 HMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALF 338


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 520 WMCAVQYRTRQPKPQ 564
           W C +QY TR    Q
Sbjct: 531 WNCVIQYNTRAENHQ 545


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 443 NEPIIFIAEFVIYAFTISTVTVRYY 369
           NE  IF+A    +++ I  + + YY
Sbjct: 206 NEIRIFVATIFTFSYCIPMILIIYY 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,814
Number of Sequences: 438
Number of extensions: 1972
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)