Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H14
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    28   0.052
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.65 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   6.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.0  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 0.052
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 374 CMKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNETWSSDCE 526
           C    C  G VC I++ G  IC    +CP  T+         NE  S+ C+
Sbjct: 380 CDSNPCQNGGVCRISDGGGYIC----DCPSGTNGTNCEIDTINECDSNPCK 426


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 202 DVGGASPRGHLRVGAPRERHGGEPGRETIPGG 297
           D G   P   LR G P   +GG P     P G
Sbjct: 46  DPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQG 77


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 167  IGALRTTTTERPTSAGLPRGDISESEHLENGMAESLDERRFQEAERARVSEILNESRDAP 346
            IG L     +R    G  R  I E E L NG+   L  +R + ++ A  + +   +  + 
Sbjct: 826  IGILWNINNKRLEPKGDNRYTIRE-EILANGVLSGLSIKRTERSDSALFTCVATNAFGSD 884

Query: 347  DNEINL 364
            D  IN+
Sbjct: 885  DTSINM 890


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 534 RYTSQSDDQVSLKFVHTLRLESVSYGHS 451
           RY+ + D   + K+ H+L++    YGH+
Sbjct: 286 RYSCR-DCSYATKYCHSLKIHLRRYGHT 312


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 534 RYTSQSDDQVSLKFVHTLRLESVSYGH 454
           RY+ + D   + K+ H+L++    YGH
Sbjct: 44  RYSCR-DCSYATKYCHSLKIHLRRYGH 69


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/27 (25%), Positives = 12/27 (44%)
 Frame = -2

Query: 600 ICTWWYCAPRHSSEWSRQRQRCRYTSQ 520
           +C W +C  R +     QR    +T +
Sbjct: 346 VCNWLFCGKRFTRSDELQRHLRTHTGE 372


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,036
Number of Sequences: 336
Number of extensions: 2752
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)