Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H13
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0129 + 18431820-18432224                                         31   0.68 
08_01_0944 - 9368901-9369158,9369460-9369839,9370072-9370314,937...    29   3.6  
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   3.6  
03_05_0165 + 21435948-21436144,21436234-21436318,21436690-214367...    29   4.8  

>01_05_0129 + 18431820-18432224
          Length = 134

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 378 RRRSRPEICPPFPIYHQPTLLVVVSNICSRT 470
           RRR RP   PP P  H P   V+V+   +RT
Sbjct: 4   RRRQRPSSSPPLPPEHSPLPSVIVATARART 34


>08_01_0944 -
           9368901-9369158,9369460-9369839,9370072-9370314,
           9370607-9370655
          Length = 309

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 177 RFQYRYLDHSTEVPSELIVSSPAAGAPWNWS 85
           RF YR LD    VPS++++  P AG   +W+
Sbjct: 241 RFMYRDLD---SVPSKIVLQDPTAGVGESWT 268


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 392 SRTPSRINHGRCYETGSLYQQQTI 321
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>03_05_0165 +
           21435948-21436144,21436234-21436318,21436690-21436768,
           21436892-21437005,21437249-21437361,21437570-21437677,
           21437760-21437879
          Length = 271

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 150 STEVPSELIVSSPAAGAPWNWSTAPAVPRTVRCSI 46
           S+   S  +V + AA AP   +TAPAVP+T  CS+
Sbjct: 36  SSSSSSARVVRTGAAAAPAA-ATAPAVPQTNECSL 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,708,096
Number of Sequences: 37544
Number of extensions: 435486
Number of successful extensions: 1196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)