Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H13
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    28   7.5  
Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 87  TSSRVRRQRVNLQLILMEPQCYGQGTDTGNENHKLSALGSVDLT--NQIKLGAVQLD*FT 260
           T+ R++R   + Q +++E   YGQ   +G   + L+   ++D+T   Q  +   QL  +T
Sbjct: 480 TAERIKRDEESKQGVIIESAKYGQCDVSGTRAYPLAGERTIDVTVPLQAMVNDSQLRVYT 539

Query: 261 IMS 269
           + S
Sbjct: 540 VKS 542


>Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical
           protein R06B9.6 protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 251 IQLYGPQFNLVSEINGAKSTELVIFVSSIGTL 156
           IQLY P +++ S   G++     IF+S+I T+
Sbjct: 366 IQLYDPFYSVWSSPTGSQIAYFAIFISAISTV 397


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 404 PTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDF 508
           P +    S      GL   F D  GASAS++ TDF
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTDF 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,994
Number of Sequences: 27780
Number of extensions: 350465
Number of successful extensions: 849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)