Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_H10
(484 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 237 7e-62
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 204 8e-52
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 176 2e-43
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 153 3e-36
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 149 4e-35
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 131 7e-30
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 115 5e-25
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 113 1e-24
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 112 5e-24
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 110 1e-23
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 109 3e-23
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 108 6e-23
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 107 1e-22
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 101 1e-20
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 93 3e-18
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 89 5e-17
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 77 3e-13
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 54 2e-06
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 47 3e-04
UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7; E... 35 0.84
UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2; C... 34 1.5
UniRef50_Q6D8R0 Cluster: Putative membrane protein; n=1; Pectoba... 33 3.4
UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisia... 33 3.4
UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=... 33 4.5
UniRef50_UPI0000D5578A Cluster: PREDICTED: similar to CG11236-PA... 32 5.9
UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3; Alphapr... 32 5.9
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 237 bits (581), Expect = 7e-62
Identities = 112/126 (88%), Positives = 122/126 (96%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLP 283
LKLT+DD+KEQI+KL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILRI+K+ GLAPDLP
Sbjct: 26 LKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLP 85
Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESST 463
EDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYKTK VLPPNWKYESST
Sbjct: 86 EDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESST 145
Query: 464 ASALVA 481
ASALVA
Sbjct: 146 ASALVA 151
Score = 52.0 bits (119), Expect = 7e-06
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = +1
Query: 28 MGRMHGPGRGISQAALAYRRSVPTWVE 108
MGRMH PG+G+SQ+AL YRRSVPTW++
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLK 27
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 204 bits (498), Expect = 8e-52
Identities = 98/126 (77%), Positives = 108/126 (85%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLP 283
LK T D+ E I K KKGLTPSQIGV+LRDSHG+ QV+ VTG KILRI+KA GLAP++P
Sbjct: 26 LKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIP 85
Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESST 463
EDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK LPP WKYES+T
Sbjct: 86 EDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTT 145
Query: 464 ASALVA 481
AS LVA
Sbjct: 146 ASTLVA 151
Score = 43.6 bits (98), Expect = 0.002
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +1
Query: 28 MGRMHGPGRGISQAALAYRRSVPTWVET 111
MGRMH G+GIS +AL Y+RS P+W++T
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKT 28
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 176 bits (429), Expect = 2e-43
Identities = 81/126 (64%), Positives = 104/126 (82%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLP 283
LK+ + ++ + + K +KG+ PSQIG+ LRDS G+AQV+ VTG+KILRI+K GLAP++P
Sbjct: 26 LKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGIAQVKNVTGRKILRILKHNGLAPEIP 85
Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESST 463
EDLY+L+K+A MRKHLER+ D+D+K+RLILVESRIHRLARYYK LPP WKYESST
Sbjct: 86 EDLYFLVKRATQMRKHLERHTTDRDTKYRLILVESRIHRLARYYKRVKQLPPTWKYESST 145
Query: 464 ASALVA 481
ASA+VA
Sbjct: 146 ASAMVA 151
Score = 37.5 bits (83), Expect = 0.16
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1
Query: 28 MGRMHGPGRGISQAALAYRRSVPTWVE 108
M RMHG GRG + +AL YRR+ P W++
Sbjct: 1 MVRMHGNGRGKASSALPYRRTPPAWLK 27
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 153 bits (370), Expect = 3e-36
Identities = 83/126 (65%), Positives = 94/126 (74%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLP 283
LK T+DD+KEQI+KL KKGLTPSQIGV LRD+HG LA DLP
Sbjct: 26 LKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTHG--------------------LALDLP 65
Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESST 463
DLY+LIKKAVA++KHLERNRKDKD+KF L L ESRIH LARY KTK +LPP+WKYES +
Sbjct: 66 GDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTESRIHPLARYCKTKRMLPPSWKYESPS 125
Query: 464 ASALVA 481
ASALVA
Sbjct: 126 ASALVA 131
Score = 32.3 bits (70), Expect = 5.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 28 MGRMHGPGRGISQAALAYRRSVPTWVET 111
MG MH P + +SQ+ L Y SV W+++
Sbjct: 1 MGAMHAPRKALSQSVLPYHHSVLMWLKS 28
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 149 bits (360), Expect = 4e-35
Identities = 68/119 (57%), Positives = 92/119 (77%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLP 283
+K + + I E I L KKGL PSQIG LRDS G+ V+ + G+ I++I+K GL P++P
Sbjct: 23 VKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAGRNIVKILKKNGLNPEIP 82
Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 460
EDL++LIKKA+ ++KHLERN+KDKDSKFRLIL ES+IHRL+RYYK +P NW+++SS
Sbjct: 83 EDLFFLIKKAINIKKHLERNKKDKDSKFRLILTESKIHRLSRYYKRIQRIPINWRFDSS 141
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 131 bits (317), Expect = 7e-30
Identities = 60/125 (48%), Positives = 90/125 (72%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLP 283
++ T + +++ + +L KKG +QIG++LRD++G+ V+ +TGKKI +IMK GL P +P
Sbjct: 26 VQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKEHGLYPKVP 85
Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESST 463
EDL L+++AV +RKHLE++ KD SK L L+ES+I RL +YYK+K VLP +W+Y T
Sbjct: 86 EDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKYYKSKGVLPADWRYTPET 145
Query: 464 ASALV 478
A LV
Sbjct: 146 ARLLV 150
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 115 bits (277), Expect = 5e-25
Identities = 53/114 (46%), Positives = 82/114 (71%)
Frame = +2
Query: 110 LTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPED 289
++ +++++++ +L +G PS IG++LRD +G+ V+ VTGKKI +I+K G+ PED
Sbjct: 28 MSPEEVEKKVLELYNEGYEPSMIGMILRDRYGIPSVKQVTGKKIQKILKEHGVEIKYPED 87
Query: 290 LYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 451
L LIKKA+ +R HLE +RKDK ++ L L+E++I RL+ YYK K VLP +WKY
Sbjct: 88 LKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSYYKEKGVLPADWKY 141
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 113 bits (273), Expect = 1e-24
Identities = 50/114 (43%), Positives = 75/114 (65%)
Frame = +2
Query: 125 IKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLI 304
++ +I +L K+G +P+ IG++LRD +G+ VR GK + ++ GL PD+P DL YL+
Sbjct: 35 VENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGKSLQDFLEEKGLLPDIPWDLIYLL 94
Query: 305 KKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTA 466
K+A + KH+E N +D +K L+ S+IHRLA+YYK K VLP +WKY A
Sbjct: 95 KRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYYKRKGVLPKDWKYSIEIA 148
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 112 bits (269), Expect = 5e-24
Identities = 58/132 (43%), Positives = 85/132 (64%), Gaps = 7/132 (5%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVT-----GKK--ILRIMKAM 262
L+ T +DI+ + KL K+G + + IG +LRD +G+ V+ +K I RI++
Sbjct: 26 LEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKH 85
Query: 263 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 442
GLAP++PEDL +LIK+AV +RKHLE++ KD S L L+ES+I RL +YYK K LP +
Sbjct: 86 GLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKD 145
Query: 443 WKYESSTASALV 478
W+Y+ A LV
Sbjct: 146 WRYDPEQAKLLV 157
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 110 bits (265), Expect = 1e-23
Identities = 49/115 (42%), Positives = 76/115 (66%)
Frame = +2
Query: 122 DIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 301
++++ I K K+GL PSQIG LRD H + R +TGK + +IM+ G P+LPEDL +
Sbjct: 31 EVEDLIVKYAKEGLAPSQIGSKLRDQHAIPLTRPITGKSVTQIMEEHGATPELPEDLNNI 90
Query: 302 IKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTA 466
++KAV +++HL N+ D+ + L L+E+++HRL YYK +P +WKY+S A
Sbjct: 91 VQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVYYKRIGRIPKDWKYKSVVA 145
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 109 bits (262), Expect = 3e-23
Identities = 49/115 (42%), Positives = 72/115 (62%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLP 283
L + D+IK + ++G KG+ IG LRD +G+ + V G+ I R ++ G+ P +P
Sbjct: 26 LTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGIGKASDVLGESITRFLQRNGVVPKIP 85
Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 448
DL L+ +A +R HL RKD +K+RLILV SR++R+ARYYK K +P NWK
Sbjct: 86 HDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVARYYKRKMRIPGNWK 140
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 108 bits (260), Expect = 6e-23
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +2
Query: 266 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 445
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKFRLI+VESRIHRLARYYK LPP W
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFRLIVVESRIHRLARYYKRTKKLPPVW 128
Query: 446 K 448
K
Sbjct: 129 K 129
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 107 bits (257), Expect = 1e-22
Identities = 48/115 (41%), Positives = 76/115 (66%)
Frame = +2
Query: 122 DIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 301
+I+E + K K GLTPSQIG+ LRD H + ++ +T K I I++ L ++PEDL +
Sbjct: 32 EIEELVIKYSKDGLTPSQIGIKLRDQHSIPLIKPITKKTIGEILEENDLKAEMPEDLENI 91
Query: 302 IKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTA 466
+KKAV +++HL+ N+ D+ + L L+E+++HRL+ YYK +P WKY+S A
Sbjct: 92 VKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVYYKKIGRIPATWKYKSVVA 146
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 101 bits (241), Expect = 1e-20
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +2
Query: 110 LTADDIKEQIFKLGKKG-LTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPE 286
LT+ ++ + I L K L PS+IG++LRD V R ++G I +I++ GL P +PE
Sbjct: 28 LTSQNLIKIIANLAKNNNLPPSKIGLVLRDEKLVVDTRNISGMNISKILRLKGLVPLVPE 87
Query: 287 DLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 460
DL+YLIKKA ++ HL + D +++ L L+ES I+RL+RYYK LP NWKY S+
Sbjct: 88 DLFYLIKKANKIKAHLSDFKHDLANRYHLNLIESHIYRLSRYYKRIFRLPKNWKYISN 145
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 93.1 bits (221), Expect = 3e-18
Identities = 46/117 (39%), Positives = 71/117 (60%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLP 283
++ + D+IKE I K+ K+G+T S IG+ LRD + + R V K+ +++K L D+P
Sbjct: 26 IQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAIPGTRPVLHMKLGQVLKENNLESDVP 85
Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYE 454
EDL LI++ KHL N+ D ++K + L+ S++ RL RYYK S LP +W E
Sbjct: 86 EDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTSRLPQDWSLE 142
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 89.0 bits (211), Expect = 5e-17
Identities = 45/121 (37%), Positives = 70/121 (57%)
Frame = +2
Query: 116 ADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLY 295
A +I+ I + K G++ +QIG +LRD H V VR V GK+I ++ + PEDL
Sbjct: 30 AKEIESLILQYFKDGMSTAQIGTILRDKHAVPNVRLVLGKRIGAVLSENDESGTYPEDLM 89
Query: 296 YLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASAL 475
L+++AVA+ +HL N +D +K L L E++I RL YYK + L +W+Y+ +
Sbjct: 90 NLMRQAVAIIEHLTTNSRDLHNKRSLELTEAKIRRLGNYYKAEGRLDSDWRYKRDQLRLI 149
Query: 476 V 478
V
Sbjct: 150 V 150
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 76.6 bits (180), Expect = 3e-13
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Frame = +2
Query: 119 DDIKEQIFKLGKKGLTPSQIGVMLRDS--HG--VAQVRFVTGKKILRIMKAMGLAPDLPE 286
D I+ ++ +L ++G +PS+IG+ LRD G + V TGKK+ I++ PDLPE
Sbjct: 31 DAIEARVVELAEQGHSPSEIGLKLRDEGVQGTPIPDVSLATGKKVTEILEENEAEPDLPE 90
Query: 287 DLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTA 466
DL L+++AV +R H++ N D +K L +S+I RL YY+ V N+ Y A
Sbjct: 91 DLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDYYRGDEV-DENFTYSYDNA 149
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 54.0 bits (124), Expect = 2e-06
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRD 196
LKLT+D++KEQI+KL KKGLTP QIGV+LRD
Sbjct: 239 LKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
Score = 41.9 bits (94), Expect = 0.007
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +1
Query: 22 ASMGRMHGPGRGISQAALAYRRSVPTWVE 108
A GR+H PG+G+S++AL Y SVPTW++
Sbjct: 212 AITGRIHVPGKGLSRSALLYHHSVPTWLK 240
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 46.8 bits (106), Expect = 3e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +1
Query: 10 NKKPASMGRMHGPGRGISQAALAYRRSVPTWVE 108
N+ A +GRMH PG+G+SQ+AL YRRSV W++
Sbjct: 438 NQTSAIVGRMHAPGKGLSQSALPYRRSVLMWLK 470
>UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7;
Eurotiomycetidae|Rep: Ribosomal protein S15, putative -
Aspergillus clavatus
Length = 306
Score = 35.1 bits (77), Expect = 0.84
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 299 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 451
L K + + +HL+ KDK +K L L+ + +L RY + K P W++
Sbjct: 238 LTAKIINLSRHLQSTNKDKHNKRNLRLLVHKRQKLLRYLRKKERGGPRWQH 288
>UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2;
Cryptosporidium|Rep: 3CCCH domain containing protein -
Cryptosporidium parvum Iowa II
Length = 591
Score = 34.3 bits (75), Expect = 1.5
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = +2
Query: 104 LKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLP 283
L++T D K + + K G+ GV+ R +HG A++R T K +LR K L P +
Sbjct: 156 LRVTNDFYKTSVCRYWKMGVK-CDAGVLCRHAHGEAELRKKTNKHLLR-RKDDQLPPSIR 213
Query: 284 ED 289
ED
Sbjct: 214 ED 215
>UniRef50_Q6D8R0 Cluster: Putative membrane protein; n=1;
Pectobacterium atrosepticum|Rep: Putative membrane
protein - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 458
Score = 33.1 bits (72), Expect = 3.4
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 330 CFLMATAFL-IR*YKSSGRSGARPIAFMIRRIFLPVTNLTCAT 205
CF +AT ++ + K S R+GA +AF I +FL LT AT
Sbjct: 173 CFFLATKYIPVATTKESSRTGAYEVAFPILMLFLVAFMLTTAT 215
>UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisiae
MRPS28: YDR337w. precursor; n=1; Aspergillus niger|Rep:
Remark: alternate name for S. cerevisiae MRPS28:
YDR337w. precursor - Aspergillus niger
Length = 280
Score = 33.1 bits (72), Expect = 3.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 299 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 448
L K + + +HL+ +KD+ +K L L+ + +L RY + K P W+
Sbjct: 212 LTAKIMNLSRHLQTTKKDRHNKRNLRLLVHKRQKLLRYLRRKERGGPRWQ 261
>UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=1;
Azoarcus sp. EbN1|Rep: Helicase/SNF2 family domain
protein - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 883
Score = 32.7 bits (71), Expect = 4.5
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 125 IKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVT-GKKILRIMKAMGLAPDLPEDLYYL 301
+ +++ +L + G T S V LR+ H V + + +K+ IM A+G A D PEDL L
Sbjct: 561 LHQRVGRLNRYGQTQSVEVVSLRNPHTVESMIWEKLEEKLGNIMLALGSAMDEPEDLLQL 620
Query: 302 I 304
+
Sbjct: 621 V 621
>UniRef50_UPI0000D5578A Cluster: PREDICTED: similar to CG11236-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG11236-PA - Tribolium castaneum
Length = 340
Score = 32.3 bits (70), Expect = 5.9
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 177 IWEGVRPFLPSLKICSLISSAVSFNPGRDTA--SVRQRRLGYTPARSVH 37
I G R +LPSL +I PGRD + +RR+G + VH
Sbjct: 257 ILTGCRKYLPSLAKAQVIRDQAGLRPGRDQVRLEIEERRIGEKVMKIVH 305
>UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3;
Alphaproteobacteria|Rep: 3-dehydroquinate synthase -
Parvularcula bermudensis HTCC2503
Length = 371
Score = 32.3 bits (70), Expect = 5.9
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = +2
Query: 233 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 388
K++ R++ GL P P+D+ LI A R +++++K + + RL+L+E+
Sbjct: 291 KRVERMIADSGL-PTRPQDIPGLITSAAEQRAFMQQDKKVEAGQLRLVLLEA 341
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,228,510
Number of Sequences: 1657284
Number of extensions: 10683007
Number of successful extensions: 29496
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29488
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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