Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H10
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   204   4e-54
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    30   0.21 
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    28   0.64 
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   0.85 
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.5  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   4.5  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   4.5  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   7.9  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  204 bits (499), Expect = 4e-54
 Identities = 95/125 (76%), Positives = 109/125 (87%)
 Frame = +2

Query: 107 KLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPE 286
           K  AD + EQI K  KKG++PSQIGV LRDSHG+ QVRF+TG+KI+RI+KA GLAP+LPE
Sbjct: 27  KADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMRILKANGLAPELPE 86

Query: 287 DLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTA 466
           DLY LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+    LPP WKYES+TA
Sbjct: 87  DLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWKYESATA 146

Query: 467 SALVA 481
           SALVA
Sbjct: 147 SALVA 151



 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 28  MGRMHGPGRGISQAALAYRRSVPTWVETN 114
           MGRMH  G+GI+ +AL Y RS P W + +
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKAD 29


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +2

Query: 215 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 394
           +R    KK+   +KA G      EDL +L    +   +  +  +++K    RL ++  RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682

Query: 395 HRLARYYKTKSVLPPNWKYES 457
             L R Y+ +++  P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +2

Query: 101 GLKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 280
           G+  ++DD   Q  +     L   QIG+ L D  G A V   T     +      L  D+
Sbjct: 62  GVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDM 117

Query: 281 --PEDLYYLIKKAVAMRKHLE 337
             PE +  L K  +  +KH E
Sbjct: 118 YAPESIELLTKSGIDFKKHQE 138


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 326 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 427
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +2

Query: 233 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 412
           KKI+ I     L      D YYL KKA  + +    N  +K+SK   I +E +  +    
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241

Query: 413 YKTKSVLPPNW 445
              +  L  +W
Sbjct: 242 VNLEKYLTKSW 252


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 356 PCPSYYVPNVSSWRQPS*SGSTNLPVDQEQ 267
           P PSY+ P  S   Q   +GST L  D +Q
Sbjct: 338 PAPSYFSPGSSFGAQLCANGSTLLRADTKQ 367


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +2

Query: 230 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 355
           G+ + ++  A  +    PE+L+  +KK+ + +K   +  K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
            Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = -2

Query: 264  PIAFMIRRIFLPVTNLTCATP*ESLSMTPIWEGVRPFLPSLKICSLISSAVSFNPGRDTA 85
            P++F+I    L      C +P E+  +  +   VR  + +LKI  L  S    N   D  
Sbjct: 828  PLSFIISWTALNTFAPICTSPKENDVVEKMAMYVRTAIGTLKIQDLKLSRKLINSCIDIG 887

Query: 84   SVRQRRLGY 58
            S  Q  LGY
Sbjct: 888  SRLQEDLGY 896


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -1

Query: 277 IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIIS 116
           ++++     D+    ++ K+ L   +   +  TDLG    L   F+DL + ++S
Sbjct: 162 VKARYKEISDSLVAVSAEKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,291
Number of Sequences: 5004
Number of extensions: 43753
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)