Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H10
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   198   2e-51
U23455-6|AAC46536.2|  518|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U70858-2|AAK68881.1|  177|Caenorhabditis elegans Odorant respons...    27   7.1  
AF324051-1|AAK01412.1|  177|Caenorhabditis elegans Ly-6-related ...    27   7.1  
AF003130-11|AAM15579.1|  250|Caenorhabditis elegans Hypothetical...    27   7.1  
AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    27   9.4  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  198 bits (482), Expect = 2e-51
 Identities = 90/125 (72%), Positives = 111/125 (88%)
 Frame = +2

Query: 107 KLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPE 286
           K+TA+++++QI K+ KKGL PSQIGV+LRDSHGV QVR + G KI RI+K+ G+AP+LPE
Sbjct: 27  KMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGVGQVRRLAGNKIFRILKSKGMAPELPE 86

Query: 287 DLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTA 466
           DLY+L+KKAVA+RKHLER+RKD DSK+RLILVESRIHRLARYYKTK  LPP WKYES TA
Sbjct: 87  DLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKRQLPPTWKYESGTA 146

Query: 467 SALVA 481
           ++LV+
Sbjct: 147 ASLVS 151



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 16/25 (64%), Positives = 23/25 (92%)
 Frame = +1

Query: 28  MGRMHGPGRGISQAALAYRRSVPTW 102
           MGRMH PG+G++++A+ YRRSVP+W
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSW 25


>U23455-6|AAC46536.2|  518|Caenorhabditis elegans Hypothetical
           protein F55E10.7 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 210 ATP*ESLSMTPIWEGVRPFLPSLKICSL--ISSAVSFNPGRDTASVRQRRLGYTPARSVH 37
           AT   + S+TPIW+ ++     +K   L   S+ +  +P +  + ++ R   Y    S H
Sbjct: 390 ATSTVNTSLTPIWKNIQQMGSHIKTAGLDTRSALMKKSPFKGKSKIQSRSAAYLDCSSAH 449


>U70858-2|AAK68881.1|  177|Caenorhabditis elegans Odorant response
           abnormal protein2, isoform b protein.
          Length = 177

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -1

Query: 370 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 203
           PE A L LP    M P+ +     +  ++R   S  TH   H  +T  L++ N SD+C T
Sbjct: 22  PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81

Query: 202 MRV 194
           +R+
Sbjct: 82  LRI 84


>AF324051-1|AAK01412.1|  177|Caenorhabditis elegans Ly-6-related
           protein ODR-2 isoform16 protein.
          Length = 177

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -1

Query: 370 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 203
           PE A L LP    M P+ +     +  ++R   S  TH   H  +T  L++ N SD+C T
Sbjct: 22  PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81

Query: 202 MRV 194
           +R+
Sbjct: 82  LRI 84


>AF003130-11|AAM15579.1|  250|Caenorhabditis elegans Hypothetical
           protein F55A12.2b protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 174 WEGVRPFLPSLKICSLISSAVSF 106
           WEG +P  P + +C+ I   VSF
Sbjct: 163 WEGSKPARPVIAMCAAIQMIVSF 185


>AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical
           protein F55A12.2c protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 174 WEGVRPFLPSLKICSLISSAVSF 106
           WEG +P  P + +C+ I   VSF
Sbjct: 220 WEGSKPARPVIAMCAAIQMIVSF 242


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 409
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 409
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 260 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 406
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 260 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 406
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 284 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 409
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 168 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,956,301
Number of Sequences: 27780
Number of extensions: 251564
Number of successful extensions: 619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)