Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_H09
(532 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 31 0.68
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 31 0.68
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 30 1.2
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 2.1
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 29 2.7
U49830-12|AAL16311.1| 363|Caenorhabditis elegans Hypothetical p... 28 3.6
Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical p... 28 4.8
Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical pr... 28 4.8
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 27 6.3
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 6.3
AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical... 27 8.4
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.68
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +2
Query: 71 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 238
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 239 KTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDNGF 385
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.68
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +2
Query: 71 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 238
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 239 KTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDNGF 385
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +2
Query: 290 KPFSVTIDVKSDIATDAVIKIFLGPKYNDNGF---PITLEENWHKFYELDWFTHKITPGQ 460
K F V I S+I + ++++F P ++ G PI + H FY L++F K+T
Sbjct: 143 KTFGVKI-ASSEIQSSHLLELF--PSLSNLGVYNVPINTQILTHNFYWLEFFKTKVTL-D 198
Query: 461 NKIVRNSNEFSLVKEDSLPLTDL 529
+ +V N ++FS ++ ++LP +L
Sbjct: 199 DILVSNCSKFS-IEYNNLPDKEL 220
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 277 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 128
W+TNL + NL+F +Y + G L ++ + + +++ F EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
protein C46A5.4 protein.
Length = 1432
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +2
Query: 257 NFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDNGFPITLEENWHKFYELDWF 436
N + +P L+ P T K DIA I + D+G P L+ W F +LD F
Sbjct: 452 NAPIEKPGLHSSPLLRTAFQKKDIADSVDIIAMVIQMGRDHGLPSYLQ--WRTFCKLDDF 509
Query: 437 T 439
+
Sbjct: 510 S 510
>U49830-12|AAL16311.1| 363|Caenorhabditis elegans Hypothetical
protein C33F10.13 protein.
Length = 363
Score = 28.3 bits (60), Expect = 3.6
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +2
Query: 278 RLNHKPFSVTIDVKSDIATDAVIKIFLG-PKYNDNGFP--ITLEENWHKFYELDWFTHKI 448
R N +SV D K D A+ + L P ++ P ++L E ++ +F+ K+
Sbjct: 156 RHNFDFYSVFTDFK-DFEIGAIRRCSLSCPPFSSQSLPDLLSLTEQISFNFDSSYFS-KL 213
Query: 449 TPGQNKIVRNSNEFSLVKEDSLPLTDLM 532
+ + +N + SL EDS+PLTDL+
Sbjct: 214 EKFKEIVSKNLSYLSL--EDSIPLTDLL 239
>Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical
protein ZK673.11b protein.
Length = 338
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 164 EKLVTFFDYSQFDATNSVFLTKKEIKTS-YPHNFKVRQPRLNHKPFSVTIDVKSDIAT 334
E V+ +++S+ NS + I S Y +NF V N + F +I +SD+A+
Sbjct: 229 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 286
>Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical
protein ZK673.11a protein.
Length = 347
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 164 EKLVTFFDYSQFDATNSVFLTKKEIKTS-YPHNFKVRQPRLNHKPFSVTIDVKSDIAT 334
E V+ +++S+ NS + I S Y +NF V N + F +I +SD+A+
Sbjct: 238 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 295
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 366 LGPKKILITASVAISDLTSMVTLKGLWLSRG*RTLK 259
+G TAS++ D+ M+ LW+SR LK
Sbjct: 1932 IGTSSETTTASISYQDIPEMLAASKLWISRNSEKLK 1967
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 366 LGPKKILITASVAISDLTSMVTLKGLWLSRG*RTLK 259
+G TAS++ D+ M+ LW+SR LK
Sbjct: 1932 IGTSSETTTASISYQDIPEMLAASKLWISRNSEKLK 1967
>AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical
protein Y82E9BL.1 protein.
Length = 124
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 457 PRSYLVREPIQFVEFMPVFFQCDGESIIVV 368
P+S L+R+PIQ V+ V CDGE+ + +
Sbjct: 93 PQS-LLRKPIQIVDDCSVKMYCDGEAKLFI 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,488,918
Number of Sequences: 27780
Number of extensions: 230151
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -