Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H07
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087...    33   0.16 
01_07_0043 + 40699334-40700482                                         29   1.5  
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853...    29   2.6  
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317           27   6.0  
01_01_0488 - 3597652-3598761,3599619-3600860                           27   6.0  
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974...    27   7.9  

>02_05_0999 +
           33405982-33408279,33408356-33408466,33408551-33408703,
           33408870-33409033,33409113-33409210,33409296-33409474,
           33409588-33409675,33410285-33410451
          Length = 1085

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 63  AASECSSYSQTAINFLNSLSMDIIKV---DNKLKEVCKQ--FPSVLPTETINNNGYRLE 224
           A  EC   S+  +NFL  L+  + K    D++ KE  +Q   P++LPT     NG +LE
Sbjct: 703 ALQECGDISEDRLNFLPELAASVKKAALEDSEEKEKAQQDAGPTLLPTCDEEGNGKKLE 761


>01_07_0043 + 40699334-40700482
          Length = 382

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 3   KRDVSFIRNNHF--DKYIRDRHAASECSSYSQTAINFLNSLSMDIIKVDNKLK 155
           +R ++ I +N F   K +R       C+ ++ T  NF N     II+V+N+++
Sbjct: 5   RRFLNLIMDNRFPVSKSLRCIDLTHHCNLFNATPPNFFNGSKSTIIRVENRIQ 57


>07_01_1214 -
           11583510-11583653,11585063-11585148,11585234-11585316,
           11585415-11585572,11587083-11587243,11588058-11588279,
           11588553-11588677,11589538-11589656,11589961-11590020,
           11590292-11590370,11591936-11592100,11592632-11592660,
           11593439-11593500,11594724-11594859,11594999-11595161,
           11595245-11595384,11597811-11597899,11598914-11599001,
           11599558-11599658,11599711-11599859,11600769-11600870,
           11601888-11601973,11602064-11602309
          Length = 930

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +3

Query: 99  INFLNSLSMDIIKVDNKLKEVCKQFPSVLPTETINNNGYR---LEYSL 233
           +NFL S S+     + ++++  + FP ++  +T +NNG+R   LE SL
Sbjct: 779 VNFLFSGSLKFPSENEEIRKHYQHFPQMVIQKTSSNNGHRRMHLELSL 826


>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
          Length = 291

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 440 DFSQLESKRYINR*GTVFEVPRCFVPVHVIR*GAHINVRSIADF 309
           ++SQL     +N  G V+ V + FV   ++R   H+N R   D+
Sbjct: 227 NYSQLRYSEAVNVIGFVYSVLQFFVLADLMRRNKHLNPRRKGDY 270


>01_01_0488 - 3597652-3598761,3599619-3600860
          Length = 783

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 357 VNGHEATWNFEYGTLTIDIPF 419
           VNG +A + +E G +T+D+P+
Sbjct: 749 VNGQDAEFKYEDGIVTVDVPW 769


>01_06_1760 -
           39697079-39697162,39697280-39697340,39697415-39697479,
           39697579-39697860,39697938-39698012,39698121-39698195,
           39698343-39698399,39698653-39698726,39698912-39699055,
           39699608-39699662,39700027-39700149,39700276-39700320,
           39701068-39701160,39701249-39701662
          Length = 548

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 69  SECSSYSQTAINFLNSLSMDIIKVDNKLKEVC 164
           S+C   S+   N LN +S ++++V  K  ++C
Sbjct: 203 SDCQQVSRVIGNDLNLISRNLLQVSEKSSQIC 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,734
Number of Sequences: 37544
Number of extensions: 220726
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)