Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H07
         (483 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021925-1|AAH21925.1|  551|Homo sapiens tripartite motif-contai...    31   2.1  
AL391121-3|CAI40861.1|  550|Homo sapiens tripartite motif-contai...    31   2.1  
AF281046-1|AAG53087.1|  551|Homo sapiens glioblastoma-expressed ...    31   2.1  
AF220034-1|AAG53488.1|  551|Homo sapiens tripartite motif protei...    31   2.1  

>BC021925-1|AAH21925.1|  551|Homo sapiens tripartite
           motif-containing 8 protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +3

Query: 9   DVSFIRNNHFDKYIRDRHAASECSSYSQTAINFLNSLSMDIIKVDNKLKEVCKQFPSVLP 188
           DVSF++N    K + DR      SS S T I  LNS  + + +V  K K++ K       
Sbjct: 295 DVSFMKNTKSVKILMDRTQTCTSSSLSPTKIGHLNS-KLFLNEVAKKEKQLRKMLEGPFS 353

Query: 189 T 191
           T
Sbjct: 354 T 354


>AL391121-3|CAI40861.1|  550|Homo sapiens tripartite
           motif-containing 8 protein.
          Length = 550

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +3

Query: 9   DVSFIRNNHFDKYIRDRHAASECSSYSQTAINFLNSLSMDIIKVDNKLKEVCKQFPSVLP 188
           DVSF++N    K + DR      SS S T I  LNS  + + +V  K K++ K       
Sbjct: 294 DVSFMKNTKSVKILMDRTQTCTSSSLSPTKIGHLNS-KLFLNEVAKKEKQLRKMLEGPFS 352

Query: 189 T 191
           T
Sbjct: 353 T 353


>AF281046-1|AAG53087.1|  551|Homo sapiens glioblastoma-expressed
           RING finger protein GERP protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +3

Query: 9   DVSFIRNNHFDKYIRDRHAASECSSYSQTAINFLNSLSMDIIKVDNKLKEVCKQFPSVLP 188
           DVSF++N    K + DR      SS S T I  LNS  + + +V  K K++ K       
Sbjct: 295 DVSFMKNTKSVKILMDRTQTCTSSSLSPTKIGHLNS-KLFLNEVAKKEKQLRKMLEGPFS 353

Query: 189 T 191
           T
Sbjct: 354 T 354


>AF220034-1|AAG53488.1|  551|Homo sapiens tripartite motif protein
           TRIM8 protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +3

Query: 9   DVSFIRNNHFDKYIRDRHAASECSSYSQTAINFLNSLSMDIIKVDNKLKEVCKQFPSVLP 188
           DVSF++N    K + DR      SS S T I  LNS  + + +V  K K++ K       
Sbjct: 295 DVSFMKNTKSVKILMDRTQTCTSSSLSPTKIGHLNS-KLFLNEVAKKEKQLRKMLEGPFS 353

Query: 189 T 191
           T
Sbjct: 354 T 354


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,655,846
Number of Sequences: 237096
Number of extensions: 1225603
Number of successful extensions: 6132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6132
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)