Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H07
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    27   0.14 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    27   0.14 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   0.98 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   0.98 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   0.98 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   0.98 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   1.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   1.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.1  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 177 SVLPTETINNNGYRLEYSLPDF-NGNFDVRIKHRMLGI 287
           S L   TI+NN Y+  Y+  ++ N N++ ++ + ++ I
Sbjct: 82  SSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINI 119


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 177 SVLPTETINNNGYRLEYSLPDF-NGNFDVRIKHRMLGI 287
           S L   TI+NN Y+  Y+  ++ N N++ ++ + ++ I
Sbjct: 82  SSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 177 SVLPTETI-NNNGYRLEYSLPDFNGN 251
           S L  +TI NNN Y+  Y+  ++N N
Sbjct: 83  SSLSNKTIHNNNNYKYNYNNNNYNNN 108


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 177 SVLPTETI-NNNGYRLEYSLPDFNGN 251
           S L  +TI NNN Y+  Y+  ++N N
Sbjct: 83  SSLSNKTIHNNNNYKYNYNNNNYNNN 108


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 177 SVLPTETI-NNNGYRLEYSLPDFNGN 251
           S L  +TI NNN Y+  Y+  ++N N
Sbjct: 83  SSLSNKTIHNNNNYKYNYNNNNYNNN 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 177 SVLPTETI-NNNGYRLEYSLPDFNGN 251
           S L  +TI NNN Y+  Y+  ++N N
Sbjct: 316 SSLSNKTIHNNNNYKYNYNNNNYNNN 341


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 177 SVLPTETI-NNNGYRLEYSLPDFNGN 251
           S L   TI NNN Y+  Y+  ++N N
Sbjct: 83  SSLSNRTIHNNNNYKYNYNNNNYNNN 108


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
          protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 16 RLFVIITLINTFVIVTRPQNVRVTHRQL 99
          R FV+ T++   + V  P N R+  R L
Sbjct: 8  RFFVLTTMLMMAIAVELPNNWRICDRSL 35


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 56  SSRGLRMFELLTDSYKLLEFIIDGYNQ 136
           S  GL++FE   D+ +L + ++  YN+
Sbjct: 21  SVAGLKIFEANPDTKRLYDDLLSNYNR 47


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 250 FPLKSGSEYSSLYPL 206
           +P+ SG  + SLYP+
Sbjct: 384 YPIGSGGSFPSLYPM 398


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 415 GISIVRVPYSK 383
           GI ++RVPY++
Sbjct: 76  GIRVIRVPYNR 86


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 254 EIPVEVRQRVLESIPIVVYSLGRQ 183
           E+P ++RQ+VL    +V+ S+ ++
Sbjct: 558 ELPDDLRQKVLPDGTLVITSVQKK 581


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 254 EIPVEVRQRVLESIPIVVYSLGRQ 183
           E+P ++RQ+VL    +V+ S+ ++
Sbjct: 558 ELPDDLRQKVLPDGTLVITSVQKK 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,689
Number of Sequences: 438
Number of extensions: 2732
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)