Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H06
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    29   0.38 
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   3.5  

>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 366 NIKQVVKQILWTIPAAINETPIDSIISGNFS*KFFPNSVASR-LPTAVTRNINIREPR 196
           N  ++V Q+L + PAA++ + I + I   +S +   NS  +R L   V +N  +R+ R
Sbjct: 420 NEDEIVLQVLESFPAAVSFSTITNTIQAKYSNRKIKNSNITRSLNRLVRKNRVLRDAR 477


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = +2

Query: 188 GGYLGSLMFMFLVTAVGNLEATLFGKNFQLKLPEIILSMGVSLIAAGMVHRICFTTCLIF 367
           GG++ SL+ M+L+   G+L   L      L LP+++  M ++L+A  +   + F+  ++ 
Sbjct: 135 GGWVYSLLAMYLLNLFGDLHPKL------LNLPQVV-RMALALVAPVLGLPLDFSITIVL 187

Query: 368 SIITI 382
            +  +
Sbjct: 188 HLTAV 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,577
Number of Sequences: 5004
Number of extensions: 33618
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)