Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H06
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical ...    29   1.8  
U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    27   5.5  
Z72514-8|CAA96677.3|  416|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z70270-6|CAA94226.2|  323|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z68108-15|CAJ58502.1|  582|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z66516-9|CAN99713.1|  455|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z66516-8|CAB60308.2|  459|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z50015-2|CAN99700.1|  455|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z50015-1|CAB60292.2|  459|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U40798-9|AAY86274.1|  226|Caenorhabditis elegans Hypothetical pr...    27   9.7  
L39212-1|AAC37255.1|  459|Caenorhabditis elegans transcription f...    27   9.7  
AY390537-1|AAQ94949.1|  692|Caenorhabditis elegans SMA-9 class B...    27   9.7  
AL021172-3|CAN99704.1|  455|Caenorhabditis elegans Hypothetical ...    27   9.7  
AL021172-2|CAB60307.2|  459|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical
           protein T24C4.9 protein.
          Length = 105

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +2

Query: 158 LVRTPITIIFGGYLGSLMFMFLVTAVGNLEATLFGKNFQLKLPEIILSMGVSLIAAGMVH 337
           +V   + ++  GYL SL  M   T    L   +FG N  + + ++I  + V  I +  + 
Sbjct: 25  MVLRSVIVLSAGYLASLALMGYFTIKMTLMCVVFGTNTLVIITDVISMIAVFTIRSDQLR 84

Query: 338 R 340
           R
Sbjct: 85  R 85


>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 266 NFQLKLPEIILSMGVSLIAAGMVHRICFTTCLIFSIIT 379
           +F   L  I +S  VSL+A  M H    TT +I SII+
Sbjct: 50  SFHGNLKTIFISYFVSLVAFSMTHLTTSTTQIIKSIIS 87


>Z72514-8|CAA96677.3|  416|Caenorhabditis elegans Hypothetical
           protein T10B10.5 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 364 IFNNNYLSHEQVITKNL-RSRSARFSAGKDSASQMT 468
           +F  +YLSH Q +T N+ + R+ RF  G + A ++T
Sbjct: 287 LFALSYLSHAQRLTMNIFKVRNVRFRNGGNVALRVT 322


>AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical
           protein Y67D8B.5 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 341 ICFTTCLIFSIITIYHMNKLSQKTYAAVAPV 433
           ICF +CLI+ I+++ ++ K  + T+  +  V
Sbjct: 8   ICFVSCLIWFIVSLMYIKKEKECTHLTMIVV 38


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 308 VSLIAAGMVHRICFTTCLIFSIITIYHMNKL 400
           +S  +AG+V  ICF T  I   IT++H  ++
Sbjct: 8   ISFTSAGLV--ICFITNFILIYITLFHSKRI 36


>Z70270-6|CAA94226.2|  323|Caenorhabditis elegans Hypothetical
           protein C53D6.4 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 262 KELSTEVTRNYTINGSFIDCC 324
           K+++TE+T N  +NG +I  C
Sbjct: 230 KDVATEITENRLVNGLYIFAC 250


>Z68108-15|CAJ58502.1|  582|Caenorhabditis elegans Hypothetical
           protein T05A10.1k protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 334 PQNL---LYHLFNIFNNNYLSHEQVITKNLRSRSARFSAGKDSASQMTEYVQ 480
           PQN+    YH  N      L+H++++   L++      + +  ASQ  + VQ
Sbjct: 24  PQNISAETYHRLNQVQREQLNHQRLLQAQLQTNGPGSVSQQQQASQQQQQVQ 75


>Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical
           protein T05A10.1b protein.
          Length = 725

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 334 PQNL---LYHLFNIFNNNYLSHEQVITKNLRSRSARFSAGKDSASQMTEYVQ 480
           PQN+    YH  N      L+H++++   L++      + +  ASQ  + VQ
Sbjct: 24  PQNISAETYHRLNQVQREQLNHQRLLQAQLQTNGPGSVSQQQQASQQQQQVQ 75


>Z66516-9|CAN99713.1|  455|Caenorhabditis elegans Hypothetical
           protein W03C9.4b protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 328 YGP--QNLLY-HLFNIFNNNYLSHEQVITKN 411
           Y P  QN  +  LFNI NN YLS     TKN
Sbjct: 351 YNPAFQNSAFSQLFNIRNNRYLSEYPTSTKN 381


>Z66516-8|CAB60308.2|  459|Caenorhabditis elegans Hypothetical
           protein W03C9.4a protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 328 YGP--QNLLY-HLFNIFNNNYLSHEQVITKN 411
           Y P  QN  +  LFNI NN YLS     TKN
Sbjct: 355 YNPAFQNSAFSQLFNIRNNRYLSEYPTSTKN 385


>Z50015-2|CAN99700.1|  455|Caenorhabditis elegans Hypothetical
           protein W03C9.4b protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 328 YGP--QNLLY-HLFNIFNNNYLSHEQVITKN 411
           Y P  QN  +  LFNI NN YLS     TKN
Sbjct: 351 YNPAFQNSAFSQLFNIRNNRYLSEYPTSTKN 381


>Z50015-1|CAB60292.2|  459|Caenorhabditis elegans Hypothetical
           protein W03C9.4a protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 328 YGP--QNLLY-HLFNIFNNNYLSHEQVITKN 411
           Y P  QN  +  LFNI NN YLS     TKN
Sbjct: 355 YNPAFQNSAFSQLFNIRNNRYLSEYPTSTKN 385


>U40798-9|AAY86274.1|  226|Caenorhabditis elegans Hypothetical
           protein R13A1.10 protein.
          Length = 226

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 238 TNCCN-EKHKHQRTEVASEYYSYWSSDQNWFIHLHSR 131
           + C N E  KH R+ +  E   + SS   W +HL+ +
Sbjct: 50  SECLNVENFKHFRSAIGVEIIEFESSLPMWLVHLNPK 86


>L39212-1|AAC37255.1|  459|Caenorhabditis elegans transcription
           factor protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 328 YGP--QNLLY-HLFNIFNNNYLSHEQVITKN 411
           Y P  QN  +  LFNI NN YLS     TKN
Sbjct: 355 YNPAFQNSAFSQLFNIRNNRYLSEYPTSTKN 385


>AY390537-1|AAQ94949.1|  692|Caenorhabditis elegans SMA-9 class B
           protein.
          Length = 692

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 334 PQNL---LYHLFNIFNNNYLSHEQVITKNLRSRSARFSAGKDSASQMTEYVQ 480
           PQN+    YH  N      L+H++++   L++      + +  ASQ  + VQ
Sbjct: 24  PQNISAETYHRLNQVQREQLNHQRLLQAQLQTNGPGSVSQQQQASQQQQQVQ 75


>AL021172-3|CAN99704.1|  455|Caenorhabditis elegans Hypothetical
           protein W03C9.4b protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 328 YGP--QNLLY-HLFNIFNNNYLSHEQVITKN 411
           Y P  QN  +  LFNI NN YLS     TKN
Sbjct: 351 YNPAFQNSAFSQLFNIRNNRYLSEYPTSTKN 381


>AL021172-2|CAB60307.2|  459|Caenorhabditis elegans Hypothetical
           protein W03C9.4a protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 328 YGP--QNLLY-HLFNIFNNNYLSHEQVITKN 411
           Y P  QN  +  LFNI NN YLS     TKN
Sbjct: 355 YNPAFQNSAFSQLFNIRNNRYLSEYPTSTKN 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,094,106
Number of Sequences: 27780
Number of extensions: 184767
Number of successful extensions: 473
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)