Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H05
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    27   0.99 
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   1.3  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   4.0  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   5.3  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   7.0  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    24   9.3  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 278 LYLTF*QFDALSGFKVSNVRYVAEALRYV 192
           +YLT     ++SG   SNVRY AEA+  V
Sbjct: 406 IYLTKNGRISISGLNTSNVRYFAEAINAV 434


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 239 NRKVHQTVKMLNIISIFTKTLN*LHSYEILSIFNVYFFQILK 364
           N K+        ++  FTK  N     EI+ I   YFF IL+
Sbjct: 140 NDKLKGHATFAEMVKAFTKIENTSKRLEIIDIMGTYFFGILR 181


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 257 TVKMLNIISIFTKTLN*LHSYEILSIFNVYF 349
           TV + N++S +       HSY ++++F +YF
Sbjct: 308 TVSLCNLVSSWILNTK-THSYALVTVFKLYF 337


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 380 HNTCPNVNQLCK 415
           HN CP + +LCK
Sbjct: 280 HNLCPTITELCK 291


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 190 ATYRSASATYRTFETLKPESASNCQNV 270
           +T RS   T  +F  L  ESA N +NV
Sbjct: 200 STLRSTQGTPMSFPNLALESADNVENV 226


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 TYRTFETLKPESASNCQNVKYNFYIYKNS*LITQLRNSFDLQCIFL 351
           TY T   L P ++   +NV+  F  Y+   L  Q ++ F L+ IFL
Sbjct: 30  TYSTI--LGPSASKEKKNVRDPFQKYRPKDLKVQRKSIFRLRYIFL 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,580
Number of Sequences: 5004
Number of extensions: 36298
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)