Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H04
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   1.0  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   2.4  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   4.1  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   4.1  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.5  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    25   5.5  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    25   5.5  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    24   7.2  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.5  

>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 250 NVGEKCLAKWRADGMFYEATIDDVTG-DNLTVNFDGYSSLEV-VSSED 387
           NV       WR  G+F+E   D  TG    T +F G++SL V + SE+
Sbjct: 761 NVVNNVFENWRQTGIFWE-QYDPTTGKGQRTKDFTGWTSLVVNIMSEN 807


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 166 GSSN-DDDVTASLLVAAENDAVEKFYAKWNVG 258
           GS+N  D +   L++ +END  EK    W VG
Sbjct: 260 GSTNWQDGMIGILVILSENDFEEKKCDSWQVG 291


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 103 IELTQDLIKSQDGDPKVHNIHGSSNDDDVTASLLVAAENDAVEK 234
           + +  D +KS D +    ++   +ND    AS+L  AEN+  E+
Sbjct: 269 VSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSEQ 312


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 322 TGDNLTV-NFDGYSSLEVVSSED 387
           TG+ L + N+DG+S L+V   ED
Sbjct: 335 TGEALALENYDGFSDLDVEEDED 357


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 371 TSSELYPSKFTVKLSPVTSSIVAS*NMPSALHLARH 264
           +SS    S   +K+ PV + IVA   +PS++   RH
Sbjct: 209 SSSSSRKSSTELKIPPVETRIVAEIPVPSSVKRRRH 244


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 141 TILTFYKILCQFNYFLQISF*LQ-ELFIL*VGKQRCFYL 28
           T  TF +I C  NYFL+  F +  ++  L + K  C  L
Sbjct: 26  TFPTFSQIPCNINYFLEQKFQVPVDIRALVLDKDNCITL 64


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 298 YEATIDDVTGDNLTVNFDGYSSL 366
           Y   + DVT  ++ ++FDGY++L
Sbjct: 103 YHLQVGDVTKISMGLHFDGYTAL 125


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 380 EDTTSSELYPSKFTVKLSPVTSSIVAS*NMPSALHLARHFS 258
           E++   EL  +      SP TSSI+     PS L    H S
Sbjct: 161 EESQKRELVSNSIKEATSPKTSSILTKPRNPSKLDSYTHLS 201


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +1

Query: 100 VIELTQDLIKSQDGDPKVHNIHGSSNDDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKW 279
           V++L   L    D    V+    +  DDD   + + A + D+  KFY    +G     K+
Sbjct: 182 VLKLVSQLSFMTDRKELVYTTCLALEDDDAYTNFVSAQQEDSSCKFYGGILIGVS-HCKY 240

Query: 280 RADGMFYEATI 312
            A G  Y   I
Sbjct: 241 AAAGASYPLPI 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.129    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,474
Number of Sequences: 5004
Number of extensions: 23900
Number of successful extensions: 54
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)