Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_H04
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0071 - 507595-507762,508027-508155,508567-508752,509306-50... 48 3e-06
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006... 33 0.11
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 31 0.25
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118... 30 0.75
09_02_0206 - 5783868-5783986,5784422-5784485,5784552-5784620,578... 29 1.7
08_02_0225 + 14469037-14469064,14470004-14470215,14470324-144704... 28 2.3
04_04_0339 - 24513699-24516827 27 5.3
07_03_1642 - 28319790-28321445 26 9.2
04_04_1448 + 33679110-33679140,33679858-33680057,33680163-336802... 26 9.2
03_06_0457 + 34070528-34070586,34070867-34070973,34072079-340721... 26 9.2
>08_01_0071 -
507595-507762,508027-508155,508567-508752,509306-509381,
509477-509559,509778-509885,510420-510497,511762-511827
Length = 297
Score = 47.6 bits (108), Expect = 3e-06
Identities = 30/97 (30%), Positives = 52/97 (53%)
Frame = +1
Query: 100 VIELTQDLIKSQDGDPKVHNIHGSSNDDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKW 279
VI LT++L+ + + N G S + ++ L A +D + + K+ VG K A W
Sbjct: 49 VITLTEELLATANQSGNTQNDVGLS-PPNYSSGLQSEALDDPSQS-HEKFAVGTKVQAVW 106
Query: 280 RADGMFYEATIDDVTGDNLTVNFDGYSSLEVVSSEDV 390
DG +Y ATI+++T + V+F+G+ + E V +V
Sbjct: 107 SEDGEWYNATIEELTENGYYVSFEGWGNKEEVDPANV 143
>08_02_0052 +
11699468-11699700,11699799-11699916,11699991-11700659,
11700741-11700842,11700921-11701181,11701838-11702009,
11702128-11702528,11703171-11703587
Length = 790
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = +1
Query: 145 PKVHNIHGSSNDDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFYEATIDDVT 324
P +HN+ ++ND ++L+ N A+E+F++ E L K + +G + +D +
Sbjct: 233 PILHNLSANANDGYTEKNVLLDLANRAMEEFFSLMKENESLLVKKKENGPLWLPHMDILG 292
Query: 325 GDNLTVNFDGY 357
++L N+ Y
Sbjct: 293 VESL--NYQEY 301
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 347 KFTVKLSPVTSSIVAS*NMPSALHLARHFSPTFHLXXXXXXXXXXXXXSRDAV 189
KFT S T +V S ++PS+ H A +PTF +DAV
Sbjct: 576 KFTFGSSSTTGKLVFSFDLPSSSHSAEEAAPTFKFGSDTKRELSFDVAGKDAV 628
>02_01_0171 -
1179095-1179388,1179668-1179801,1180036-1180900,
1180998-1181258,1181424-1181621,1181752-1181982,
1185337-1185648,1185750-1186247
Length = 930
Score = 29.9 bits (64), Expect = 0.75
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 289 GMFYEATIDDVTGDNLTVNFDG 354
G F+E T+ DVT D++T++ DG
Sbjct: 854 GWFWEYTLSDVTIDSITISLDG 875
>09_02_0206 -
5783868-5783986,5784422-5784485,5784552-5784620,
5784698-5784940,5786844-5786912,5786988-5787212,
5787289-5787532,5787607-5787716,5787948-5788016,
5788988-5789042,5789063-5789097,5789422-5789514,
5789545-5789595
Length = 481
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 253 VGEKCLAKWRADGMFYEATIDD 318
+ K +++W D FYEATI D
Sbjct: 268 INRKVMSRWPEDNSFYEATITD 289
>08_02_0225 +
14469037-14469064,14470004-14470215,14470324-14470433,
14470498-14470765,14470878-14471087,14471162-14471230,
14473346-14473591,14473672-14473740,14473808-14473871,
14474468-14474583
Length = 463
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 253 VGEKCLAKWRADGMFYEATIDD 318
+G K + +W D FYEA I D
Sbjct: 250 IGRKVMTRWPDDNSFYEAVITD 271
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1
Query: 139 GDPKVHNIHGSSNDDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFYEATIDD 318
GD ++ + SS DD + S L N + + +CL K R G + +DD
Sbjct: 206 GDDRIWVVVSSSFDDMIILSRLAEFLN--TRQCNTVDSESLQCLVKQRLCGRKFLIVLDD 263
Query: 319 VTGDNL 336
V G NL
Sbjct: 264 VWGQNL 269
>07_03_1642 - 28319790-28321445
Length = 551
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 178 DDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFYEATIDDVTGDNLTVNFDGY 357
DDD A +L EN+ +E + + L+ R D EA +++ NL+ + Y
Sbjct: 193 DDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAAR-DITKVEAVFEEMKSKNLSGDVYFY 251
Query: 358 SSL 366
SS+
Sbjct: 252 SSV 254
>04_04_1448 +
33679110-33679140,33679858-33680057,33680163-33680272,
33680372-33680591,33680672-33680794,33680892-33680960,
33681915-33682157,33682235-33682297,33682414-33682477,
33682740-33682810
Length = 397
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 253 VGEKCLAKWRADGMFYEATIDD 318
+ K +W D FYEATI D
Sbjct: 202 INRKIYTRWPDDNNFYEATITD 223
>03_06_0457 +
34070528-34070586,34070867-34070973,34072079-34072110,
34072753-34072845
Length = 96
Score = 26.2 bits (55), Expect = 9.2
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +1
Query: 112 TQDLIKSQD-GDPKVHNIHGSSNDDDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRAD 288
T L+K D G PK DDD ++ + F+ W + C+ +
Sbjct: 24 TGSLVKQPDIGSPKGRTRQPPRVDDD--------DDDGRPDLFFMGWRDYQACI-NYGES 74
Query: 289 GMFYEATIDDVTGDNLTVNFDG 354
E D++ DNL +NFDG
Sbjct: 75 QEEEEIRRDNIARDNLALNFDG 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.129 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,095,696
Number of Sequences: 37544
Number of extensions: 156616
Number of successful extensions: 316
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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