Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_H04
(390 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006816-4|AAK85507.1| 239|Caenorhabditis elegans Smn (survival... 43 7e-05
Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical pr... 35 0.023
Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical pr... 35 0.023
Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein pro... 35 0.023
AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival moto... 35 0.023
AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical ... 33 0.054
AC006816-5|AAP46266.1| 44|Caenorhabditis elegans Smn (survival... 33 0.071
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 29 1.2
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 29 1.5
AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote defect... 26 8.2
AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote defec... 26 8.2
>AC006816-4|AAK85507.1| 239|Caenorhabditis elegans Smn (survival of
motor neuron protein)related protein 1, isoform a
protein.
Length = 239
Score = 43.2 bits (97), Expect = 7e-05
Identities = 38/130 (29%), Positives = 56/130 (43%)
Frame = +1
Query: 1 LRNYKLQLQQVEAALLTDSQNXXXXXXXXXXXXVIELTQDLIKSQDGDPKVHNIHGSSND 180
L +YKLQLQQVEAALL D N +I L +DL ++ + S++
Sbjct: 5 LASYKLQLQQVEAALLGDPTNVELLKLKEDLGEIISLQEDLAETDKAE---------SSE 55
Query: 181 DDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFYEATIDDVTGDNLTVNFDGYS 360
V A ++ KW VGE+ +A DG A ID +T + + F
Sbjct: 56 RAVVAPQVI-----------HKWTVGERVIAP-HPDGKKVFARIDSLTPAGVAITFTSTG 103
Query: 361 SLEVVSSEDV 390
+ +V D+
Sbjct: 104 TKTIVDPADL 113
>Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical
protein C41G7.1b protein.
Length = 207
Score = 34.7 bits (76), Expect = 0.023
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 232 KFYAKWNVGEKCLAKWRADGMF--YEATIDDVTG-DNLT--VNFDGYSSLEVVSSEDV 390
K Y W VG KC+A + +G Y ATID + G DNL V F Y VV +D+
Sbjct: 53 KMYT-WKVGGKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109
>Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical
protein C41G7.1a protein.
Length = 197
Score = 34.7 bits (76), Expect = 0.023
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 232 KFYAKWNVGEKCLAKWRADGMF--YEATIDDVTG-DNLT--VNFDGYSSLEVVSSEDV 390
K Y W VG KC+A + +G Y ATID + G DNL V F Y VV +D+
Sbjct: 43 KMYT-WKVGGKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99
>Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein
protein.
Length = 197
Score = 34.7 bits (76), Expect = 0.023
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 232 KFYAKWNVGEKCLAKWRADGMF--YEATIDDVTG-DNLT--VNFDGYSSLEVVSSEDV 390
K Y W VG KC+A + +G Y ATID + G DNL V F Y VV +D+
Sbjct: 43 KMYT-WKVGGKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 99
>AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival motor
neuron protein protein.
Length = 207
Score = 34.7 bits (76), Expect = 0.023
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 232 KFYAKWNVGEKCLAKWRADGMF--YEATIDDVTG-DNLT--VNFDGYSSLEVVSSEDV 390
K Y W VG KC+A + +G Y ATID + G DNL V F Y VV +D+
Sbjct: 53 KMYT-WKVGGKCMAPYEENGEVTDYPATIDTIGGADNLEVGVTFIYYGGQAVVQMKDL 109
>AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical
protein Y50D4C.3 protein.
Length = 605
Score = 33.5 bits (73), Expect = 0.054
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 244 KWNVGEKCLAKWRADGMFYEATIDDVTGDNLT-VNFDGYSSLEVV 375
+W VG +CLA W DG Y AT+ ++ + V ++ Y ++ +
Sbjct: 554 QWRVGAQCLATW-TDGNLYPATVTELLPNRTAIVRYNEYGNMHTI 597
>AC006816-5|AAP46266.1| 44|Caenorhabditis elegans Smn (survival
of motor neuron protein)related protein 1, isoform b
protein.
Length = 44
Score = 33.1 bits (72), Expect = 0.071
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +1
Query: 1 LRNYKLQLQQVEAALLTDSQN 63
L +YKLQLQQVEAALL D N
Sbjct: 5 LASYKLQLQQVEAALLGDPTN 25
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +1
Query: 256 GEKCLAKWRADGMFYEATIDDVTGDNLTVNFDGYSSLEVVSS 381
G+ C+AK+ DG +Y ++ V + + Y + E + +
Sbjct: 744 GDLCVAKFSQDGQWYRCKVESVRAGQAEIVYIDYGNRETIEA 785
>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex
protein protein10, isoform b protein.
Length = 1189
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 181 DDVTASLLVAAENDAVEKFYAKWNVGEKCLAKWRADGMFY 300
DD+ + +VA ++DA++ A E + +W A GM Y
Sbjct: 1056 DDIAPTAVVAGDHDALKAACAMVRPFENQIPEWGATGMVY 1095
>AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote
defective-1 protein.
Length = 706
Score = 26.2 bits (55), Expect = 8.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -2
Query: 386 SSEDTTSSELYPSKFTVKLSPVTSSI 309
S+++ +S + PSK+ +K+ P T +
Sbjct: 620 STDENSSPSVAPSKYKIKIDPTTQKV 645
>AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote
defective: embryonic lethalprotein 1 protein.
Length = 706
Score = 26.2 bits (55), Expect = 8.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -2
Query: 386 SSEDTTSSELYPSKFTVKLSPVTSSI 309
S+++ +S + PSK+ +K+ P T +
Sbjct: 620 STDENSSPSVAPSKYKIKIDPTTQKV 645
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.129 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,843,834
Number of Sequences: 27780
Number of extensions: 136987
Number of successful extensions: 310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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