Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_H03
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 27 1.7
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 1.7
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 27 1.7
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.9
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 3.9
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 6.8
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 9.0
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 24 9.0
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 24 9.0
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c... 24 9.0
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 24 9.0
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 26.6 bits (56), Expect = 1.7
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 160 VLEHVVHSGTDSVEVRNLRNIWQVFSGECF-GTEIVVVVMEEIYFTGSRH 14
+L HV + GT+SV++ R I Q F +CF V + E +F RH
Sbjct: 111 ILFHVTYDGTESVDL--ARPIIQEFFLKCFLQNNKSVTPVYESFFNQPRH 158
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 109 LRNIWQVFSGECFGT--EIVVVVMEEIYFTGSRHFV 8
+ IW V SG+C T E + V + + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 214 LLSGGKTESLQDSDHIAGLQRRLEE 288
+L GGK+ + D+D +AG + +LEE
Sbjct: 246 ILRGGKSGTNFDADSVAGAKAKLEE 270
>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 131 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 229
G+G +F DK G A F++ DYS G
Sbjct: 61 GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93
>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 345 ENEKLVLGSHEDLMKGVSNFFQPALK 268
EN L + SH DL++ V NF A K
Sbjct: 72 ENVLLKIASHVDLVEPVENFISTAKK 97
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 6.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 97 WQVFSGECFGTEIVVV 50
W VFSG +GT I+ +
Sbjct: 87 WAVFSGNMYGTSIMAI 102
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.2 bits (50), Expect = 9.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 393 ISLSFKLMTVLN*KYLENEKLVLGSHEDLMKGVSNFFQPALKSSDV 256
+S+SF ++T L+ K + E V SH G+ NF K+ +V
Sbjct: 1482 VSISFSVLTNLDNKEVNLEDAVPASHRS-ASGIVNFDVEKGKTEEV 1526
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 214 LLSGGKTESLQDSDHIAGLQRRLEE 288
+L GGK D++H+A +++ LE+
Sbjct: 244 ILRGGKKGPNYDAEHVAAVRKDLEK 268
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 24.2 bits (50), Expect = 9.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 5 GDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPNFNTVGAG 139
G + KVN+F D DF+A K + P +P TV AG
Sbjct: 64 GSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLPDP-MPARTTVAAG 107
>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 217
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 354 KYLENEKLVLGSHEDLMKGVSNFFQPALKSSDVVG 250
++LEN+KL L SHE+ + P K VG
Sbjct: 53 QFLENDKLDLNSHENEGEKTKTETVPTRKQFPKVG 87
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 24.2 bits (50), Expect = 9.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 217 LSGGKTESLQDSDHIAGLQRRLEEVRYAFH*VLVGTQH*FLVFQI 351
L G S S I G Q RL+E+ +L+G+ ++QI
Sbjct: 526 LPGAALLSTSVSAEIVGFQSRLKEIIALLQKLLIGSSQCEAIYQI 570
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,194
Number of Sequences: 5004
Number of extensions: 37960
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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