Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_H03
(441 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein. 31 2.3
BC093660-1|AAH93660.1| 931|Homo sapiens transient receptor pote... 30 4.1
BC093658-1|AAH93658.1| 931|Homo sapiens transient receptor pote... 30 4.1
AJ271068-1|CAC01686.1| 876|Homo sapiens transient receptor pote... 30 4.1
AJ271067-1|CAC01685.1| 815|Homo sapiens transient receptor pote... 30 4.1
AJ271066-1|CAC01684.1| 931|Homo sapiens transient receptor pote... 30 4.1
AJ006276-1|CAA06943.1| 931|Homo sapiens transient receptor pote... 30 4.1
AF080394-1|AAC63289.2| 931|Homo sapiens transient receptor pote... 30 4.1
BC068483-1|AAH68483.1| 792|Homo sapiens RAD50 interactor 1 prot... 29 9.4
AK021847-1|BAB13910.1| 416|Homo sapiens protein ( Homo sapiens ... 29 9.4
AF317622-1|AAG42101.1| 821|Homo sapiens RAD50-interacting prote... 29 9.4
AC073073-1|AAQ96849.1| 416|Homo sapiens unknown protein. 29 9.4
>AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein.
Length = 708
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -2
Query: 224 PESSHYD*RHRCERRSQMHQSCP*TCSPLRHR 129
P SH HRC RSQ +S P +C RHR
Sbjct: 274 PRKSHRHRHHRCPSRSQSSESRPSSCES-RHR 304
>BC093660-1|AAH93660.1| 931|Homo sapiens transient receptor potential
cation channel, subfamily C, member 6 protein.
Length = 931
Score = 29.9 bits (64), Expect = 4.1
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = -1
Query: 354 KYLENEKL-VLGSHEDL------MKGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKT 196
K E +KL +LGSHEDL K V + QP+++SS+ L F+ PPR+ +K
Sbjct: 803 KINEEKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKR 861
Query: 195 SV*AAVADAPI 163
+ V A I
Sbjct: 862 LIKRYVLQAQI 872
>BC093658-1|AAH93658.1| 931|Homo sapiens transient receptor potential
cation channel, subfamily C, member 6 protein.
Length = 931
Score = 29.9 bits (64), Expect = 4.1
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = -1
Query: 354 KYLENEKL-VLGSHEDL------MKGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKT 196
K E +KL +LGSHEDL K V + QP+++SS+ L F+ PPR+ +K
Sbjct: 803 KINEEKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKR 861
Query: 195 SV*AAVADAPI 163
+ V A I
Sbjct: 862 LIKRYVLQAQI 872
>AJ271068-1|CAC01686.1| 876|Homo sapiens transient receptor
potential channel 6, variant delta377-431 protein.
Length = 876
Score = 29.9 bits (64), Expect = 4.1
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = -1
Query: 354 KYLENEKL-VLGSHEDL------MKGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKT 196
K E +KL +LGSHEDL K V + QP+++SS+ L F+ PPR+ +K
Sbjct: 748 KINEEKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKR 806
Query: 195 SV*AAVADAPI 163
+ V A I
Sbjct: 807 LIKRYVLQAQI 817
>AJ271067-1|CAC01685.1| 815|Homo sapiens transient receptor
potential channel 6, variant delta316-431 protein.
Length = 815
Score = 29.9 bits (64), Expect = 4.1
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = -1
Query: 354 KYLENEKL-VLGSHEDL------MKGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKT 196
K E +KL +LGSHEDL K V + QP+++SS+ L F+ PPR+ +K
Sbjct: 687 KINEEKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKR 745
Query: 195 SV*AAVADAPI 163
+ V A I
Sbjct: 746 LIKRYVLQAQI 756
>AJ271066-1|CAC01684.1| 931|Homo sapiens transient receptor potential
channel 6 protein.
Length = 931
Score = 29.9 bits (64), Expect = 4.1
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = -1
Query: 354 KYLENEKL-VLGSHEDL------MKGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKT 196
K E +KL +LGSHEDL K V + QP+++SS+ L F+ PPR+ +K
Sbjct: 803 KINEEKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKR 861
Query: 195 SV*AAVADAPI 163
+ V A I
Sbjct: 862 LIKRYVLQAQI 872
>AJ006276-1|CAA06943.1| 931|Homo sapiens transient receptor potential
protein protein.
Length = 931
Score = 29.9 bits (64), Expect = 4.1
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = -1
Query: 354 KYLENEKL-VLGSHEDL------MKGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKT 196
K E +KL +LGSHEDL K V + QP+++SS+ L F+ PPR+ +K
Sbjct: 803 KINEEKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKR 861
Query: 195 SV*AAVADAPI 163
+ V A I
Sbjct: 862 LIKRYVLQAQI 872
>AF080394-1|AAC63289.2| 931|Homo sapiens transient receptor potential
protein 6 protein.
Length = 931
Score = 29.9 bits (64), Expect = 4.1
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = -1
Query: 354 KYLENEKL-VLGSHEDL------MKGVSNFFQPALKSSDVVGVLKRFSFPPRE*SLRLKT 196
K E +KL +LGSHEDL K V + QP+++SS+ L F+ PPR+ +K
Sbjct: 803 KINEEKKLGILGSHEDLSKLSLDKKQVGHNKQPSIRSSEDFH-LNSFNNPPRQYQKIMKR 861
Query: 195 SV*AAVADAPI 163
+ V A I
Sbjct: 862 LIKRYVLQAQI 872
>BC068483-1|AAH68483.1| 792|Homo sapiens RAD50 interactor 1
protein.
Length = 792
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 252 RPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSLI*NLKKLFKTIVLRK 419
+ RW S P +SLS P L++ ++ L+Q L +L K+F +++ K
Sbjct: 626 KKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEK 681
>AK021847-1|BAB13910.1| 416|Homo sapiens protein ( Homo sapiens
cDNA FLJ11785 fis, clone HEMBA1006035. ).
Length = 416
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 252 RPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSLI*NLKKLFKTIVLRK 419
+ RW S P +SLS P L++ ++ L+Q L +L K+F +++ K
Sbjct: 250 KKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEK 305
>AF317622-1|AAG42101.1| 821|Homo sapiens RAD50-interacting protein
1 protein.
Length = 821
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 252 RPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSLI*NLKKLFKTIVLRK 419
+ RW S P +SLS P L++ ++ L+Q L +L K+F +++ K
Sbjct: 655 KKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEK 710
>AC073073-1|AAQ96849.1| 416|Homo sapiens unknown protein.
Length = 416
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 252 RPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSLI*NLKKLFKTIVLRK 419
+ RW S P +SLS P L++ ++ L+Q L +L K+F +++ K
Sbjct: 250 KKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEK 305
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,034,016
Number of Sequences: 237096
Number of extensions: 1351379
Number of successful extensions: 2525
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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