Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H03
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   3.5  
Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 64  QCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQDWC 171
           QCQ  +    AKY      Q+C+  +  H Q   WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical
           protein ZK262.11 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 123 LKFGT*GIFGRFLVANALALK-SWLSLWKRFTLP 25
           L+F T GI G F     +  K SW+ LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 95  PNIPQVPNFNTVGAGVDYMFKDKIGASATAAHTD 196
           P +PQ  ++    +G+   F D  GASA+++ TD
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTD 184


>Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical
           protein C43D7.6 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 123 LKFGT*GIFGRFLVANALALK-SWLSLWKRFTLP 25
           L+F T GI G F     +  K SW+ LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = +2

Query: 35  NLFHNDNHDFSAKAFATKN-----LPNIPQVPN 118
           N  H+D  DF+A ++  KN     LP +P++PN
Sbjct: 530 NCRHSDAIDFAAMSYIWKNIRQQHLPKLPKLPN 562


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = +2

Query: 35  NLFHNDNHDFSAKAFATKN-----LPNIPQVPN 118
           N  H+D  DF+A ++  KN     LP +P++PN
Sbjct: 530 NCRHSDAIDFAAMSYIWKNIRQQHLPKLPKLPN 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,421,084
Number of Sequences: 27780
Number of extensions: 219675
Number of successful extensions: 496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)