Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H02
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   3.1  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   4.1  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   7.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   7.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   7.1  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    24   9.4  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    24   9.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    24   9.4  
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    24   9.4  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    24   9.4  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    24   9.4  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    24   9.4  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 118 WMWNSFFYRSSNNGMCT 68
           WMWNSF   S  NG  T
Sbjct: 421 WMWNSFRGASDENGEVT 437


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 152 DIALIRLMVTAPYTDFVRPICLPSLDYTQQPPADFEMYVAGW 277
           D   + +       +FV P CL  + +T+     F ++VA W
Sbjct: 43  DCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFVLHVANW 84


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 202 YKICIRCCYHQPNKRNVMSALHIVGDVIWMWNSFFY 95
           Y I  RC   +   + +  +  IVG   W+W+S F+
Sbjct: 124 YHIMRRCIPDEHPAKRLCLSWAIVGMNAWVWSSVFH 159


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 295  ELLVHSPTGDVHFKICRGL 239
            ELL+    G+ H+ +CRGL
Sbjct: 1701 ELLLRMEDGNYHWHLCRGL 1719


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 151 MSALHIVGDVIWMWNSFFY 95
           M A  +V D  W W  FF+
Sbjct: 259 MDAHRVVRDYAWYWGDFFF 277


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 172 QPNKRNVMSALHIVGDVIWMWNSFFYRSSNNGMCTV-FGTFHAVRTI 35
           +P+K N+MS   + G +    N+  +R   +G+  V  G +++++ I
Sbjct: 567 KPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIVPRGNYYSIKNI 613


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 343 EFNVWFNCTRQTSARYELLVHSPTGDV 263
           +FNV F+   QT+   ++   SP G V
Sbjct: 444 QFNVHFSIVSQTNPHVQVFFFSPRGTV 470


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 385 CPLRCLTSVSINIWEFNVWFNC-TRQTSARYELLVH 281
           CP+  L++   N  EF VW +   R  S    L+VH
Sbjct: 887 CPIVALSATVGNPQEFQVWLSALQRAHSYPIHLIVH 922


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = +2

Query: 206 PICLPSLDYTQQPPADFEMYVAGWGMYKQF--ISGTGLSSTVKPHVKLPYVDR 358
           P C  S  YT Q   +  +    WG+ + F    G      V   VK P V++
Sbjct: 58  PPCTFSRSYTDQKRKEIHLGSTEWGLKESFTLTRGPNRRGNVGKGVKRPMVNK 110


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 183 HRIQILYG-PSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNHTL 338
           H   +L G P V +   +RN   Q+L    P    TS   L+LV  V +N TL
Sbjct: 198 HEAVLLSGNPMVAQKRYLRNWTTQVLSIILPNYYETSPLVLSLVTEVIINTTL 250


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 127 DVIWMWNSFFYRSSNNGMCTVFGTFHAVR 41
           D++W W   ++    N M  + G+F   R
Sbjct: 209 DIVWEWKEEYHNRIKNQMSRLGGSFDWTR 237


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 105 VFSIGAVTTGCAQSLVPFM-QSGPLFVVLYSPKR 7
           V ++GA+  GC   +V ++ +  P F+ L   K+
Sbjct: 435 VLAVGAIAEGCMDGMVQYLPELYPYFLSLLDSKK 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,745
Number of Sequences: 5004
Number of extensions: 49462
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)