Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_H02
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0487 + 14629678-14629789,14637563-14637687,14637898-146379... 29 1.3
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 28 3.0
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 28 4.0
03_05_0885 - 28505628-28505767,28505892-28505970,28506048-285061... 28 4.0
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 28 4.0
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290... 27 7.0
07_01_0437 - 3322132-3322251,3322345-3322569,3322953-3323120,332... 27 7.0
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 27 9.2
07_01_0344 - 2490700-2493249 27 9.2
>05_03_0487 +
14629678-14629789,14637563-14637687,14637898-14637987,
14638267-14638319,14638616-14638718,14639057-14639131,
14639479-14639583
Length = 220
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 429 HSCSLVITSASPPRNVLCAA*HLSLSTYGSLTCGLTVLD 313
H C++ TS++ N C A ++S ST LTC + +D
Sbjct: 166 HFCTISATSSAV--NSFCIAANMSFSTTSELTCSMCFMD 202
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 361 VSINIWEFNVWFNCTRQTSARYELLVHSPTG 269
+S+ WE +W +C Q S + ++V + TG
Sbjct: 1417 LSVCQWEVKLWLDCDGQASGAWRVVVTNVTG 1447
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 327 LTVLDKPVPDMN-CLYIPQPATYISKS 250
+ VL PVP N CL+IP+ A Y SK+
Sbjct: 416 IPVLYSPVPFQNGCLHIPEVALYNSKA 442
>03_05_0885 -
28505628-28505767,28505892-28505970,28506048-28506163,
28506588-28506654,28507361-28507456,28508729-28508838,
28508983-28509070,28510109-28510183,28510401-28510445,
28510521-28510595,28511392-28511763
Length = 420
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 189 IQILYGPSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNHTLNSHMLIETDV 368
I+++ P+ + +++ + C + +GE TS +YL + + L+SH +I D+
Sbjct: 205 IEVIDDPNADKFYMVLEYVEGKMVCDNGLGEATSRNYLRDIISGVM--YLHSHNIIHGDI 262
Query: 369 K 371
K
Sbjct: 263 K 263
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 59 TKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALI 166
TK C V TAPI KTI + Y D G+ D+ L+
Sbjct: 427 TKHCTRAVYTAPI-KTISNQKY--RDFCGKFDVGLL 459
>07_03_0502 +
18826595-18826660,18826815-18826885,18828963-18829056,
18829575-18831521
Length = 725
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 14 GEYNTTNNGPDCMKGTKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHD 154
G++ +N G CMKGT P V EK P+P ++ +V G D
Sbjct: 541 GKFVVSNLG--CMKGTSQVPDPKVLNHWEK--PNPGWMKLNVDGSFD 583
>07_01_0437 -
3322132-3322251,3322345-3322569,3322953-3323120,
3323207-3323322,3323394-3323546,3323655-3323798,
3324475-3325255
Length = 568
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 447 PGLPPAHSCSLVITSASPPRNVLCAA*HLSLST 349
PG PP S +TS++ P V A LS ST
Sbjct: 39 PGYPPRESSHSSVTSSTAPERVTIADSDLSSST 71
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 298 YELLVHSPTG--DVHFKICRGLLRIIQRR*TDGPYKICIRCCYHQPNKRNVMSALHI 134
++ ++ P G D +IC +L +++RR G + I+ H P N+ LHI
Sbjct: 421 WDAILGDPEGPPDTLLRICCAMLILVRRRLLAGDFTANIQLLQHYP-PTNIDHLLHI 476
>07_01_0344 - 2490700-2493249
Length = 849
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 267 SPVGECTSSSYLALVCRVQLNHTLNSHMLIETDV-----KQRKGHCVGA 398
S +G C + + LV N TL SH L TD+ KQR C+GA
Sbjct: 575 SLIGYCDEQNEMILVYEHMANGTLRSH-LYGTDLPALTWKQRLEICIGA 622
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,997
Number of Sequences: 37544
Number of extensions: 346068
Number of successful extensions: 885
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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