Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G22
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||...    24   3.1  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    23   5.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    23   7.1  

>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 205

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 22  TDPVHRDLSDPVHRDLSAQ 78
           +D +  D +DP+H D+ +Q
Sbjct: 181 SDDIAADFTDPIHLDMESQ 199


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 145 FENRNRNRRTIPSNQNRIIPM 83
           FEN+NR+     S++  +IP+
Sbjct: 441 FENKNRHTHEKKSSEKEVIPV 461


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 229 GSERSVHVEMKNAHRENRFCK*DRNLQRFENRNRNRRT 116
           GS +S    +   +R   F K D+NL   +    N+RT
Sbjct: 60  GSTKSSVSSLPELNRNVSFEKSDQNLAETKREEENKRT 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,537
Number of Sequences: 5004
Number of extensions: 7931
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)