Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G22
         (235 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-3|CAB04691.1|  203|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AC006642-7|AAF39828.1|  154|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...    25   9.5  

>Z81586-3|CAB04691.1|  203|Caenorhabditis elegans Hypothetical
           protein T05F1.4 protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 220 RSVHVEMKNAHRENRFCK*DRNLQRFENRNRNRRTIPSNQNRI 92
           RS H E ++ HR N +        R +NR  +R   PSN N++
Sbjct: 47  RSNHSEDRHEHRFNNY--------RQQNRPNSRTPSPSNHNQV 81


>AC006642-7|AAF39828.1|  154|Caenorhabditis elegans Hypothetical
           protein F49H12.2 protein.
          Length = 154

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 184 ENRFCK*DRNLQRFENRNRNRRTIPS 107
           EN+  K +RNL++ + R  NR   P+
Sbjct: 40  ENQLRKRNRNLEKIDERENNRLETPA 65


>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 165 YLQNRFSRCAFFISTWTDLS 224
           Y+      CAFF  TW D+S
Sbjct: 361 YIVFMLGSCAFFSKTWIDVS 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,890,587
Number of Sequences: 27780
Number of extensions: 47478
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)