Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_G21
(523 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 28 0.73
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce... 27 1.7
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 27 2.2
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 3.0
SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.9
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 26 3.9
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 26 3.9
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 5.2
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 9.0
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 9.0
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 28.3 bits (60), Expect = 0.73
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 261 GNEVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRL-MHVYAEKSKESAT 416
GN+ D + ++ +I Q +A +TF P LEEQ + VYA+K E T
Sbjct: 116 GNKEDELRVQKEIQALIRQ---ITATVTFLPQLEEQCTFNVLVYADKDSEVPT 165
>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 27.1 bits (57), Expect = 1.7
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 270 VDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRLMHVYAEKSKESATGENAGEGV-SG 446
V+ATK + ++NV+ A+ D++ KRL + EK S E A E V SG
Sbjct: 108 VEATKGNPNIANVVYDEHYVYALTPGREDMKNVKRLAEI-GEKVDFSMPCEEAIEKVKSG 166
Query: 447 QF-VVQYDVDRPKDGQILVND 506
+ V++ V D +V D
Sbjct: 167 EIKVIKMAVCEDPDKLDVVRD 187
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -1
Query: 487 PSFGRSTSYCTTN*PETPSPAFSPVADSFDFSAYTC 380
P F RST YCT +P F D + + C
Sbjct: 445 PRFARSTPYCTDIAKSMEAPIFHVNGDDVEAVTFIC 480
>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 421 SPVADSFDFSAYTCINRFCSSKSGENVMTAEVPSL*MITFDI*ASSFVA-STSFPVLISG 245
SP D+F Y + RF S +M A+ + +D+ A + A FP+ ++
Sbjct: 87 SPDNDAFIKRKYATVQRFRMSSMRMGLMMAQQGTTMPAKYDVPAEEYGAFGGGFPIKLTS 146
Query: 244 TRNSEIFAVSLICTVT 197
+F +S+ +T
Sbjct: 147 GIQIGVFCISVRFLIT 162
>SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 292 ASSFVASTSFPVLISGTRNSEIFAVSLICTVTVNLG 185
AS F STS + GT+N F S + T ++G
Sbjct: 24 ASRFSFSTSVASRVDGTKNGWSFTASNVADQTTDIG 59
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +3
Query: 96 VIFNLTYEEMLVRRNDVYQHVVNLHPGSLVPK 191
++F + Y+ L++ +DVY H + + + +PK
Sbjct: 28 MLFFINYKTDLLKVDDVYNHEIYSNQSAAIPK 59
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 503 VH*NLSIFRSIYIILYNKLT*DTFSRIFPCSRFFRFLRIYVH 378
+H + +F+ I+ IL L DTFS + C R + L+ +++
Sbjct: 643 LHPIVRLFQDIWPILSRTL--DTFSDVLICERISKLLKNFIY 682
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +3
Query: 357 LEEQKRLMHVYAEKSKESATGENAGEGVSGQFVVQY 464
+++Q +MH + ++ E EGVS + ++Q+
Sbjct: 546 MKDQSYIMHYWVQRENYEKALETLNEGVSQETLIQH 581
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +3
Query: 324 GTSAVITFSPDLEEQKRLMHVYAEKSKE 407
G ++ + + +++ + +HVY EKSK+
Sbjct: 734 GCEPILQYVYEAKDKHKSLHVYLEKSKD 761
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/59 (20%), Positives = 26/59 (44%)
Frame = +3
Query: 249 EIRTGNEVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRLMHVYAEKSKESATGEN 425
E + + ++ + DA+ +N + EG+ DL + ++ E E+ G+N
Sbjct: 1111 EFKVSSSNNSKQTDAEETNTGVPLEGSQPNSVEKTDLADGDEKANIKTEMKSETVEGDN 1169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,081
Number of Sequences: 5004
Number of extensions: 44706
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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