Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G21
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69661-3|CAA93490.1|  293|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z99102-1|CAB11776.1|  523|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   3.5  
U46671-1|AAA85747.1|  364|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    28   4.7  
Z68222-6|CAE18046.2|  104|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82053-5|CAB04833.1|  103|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC084155-4|AAG23365.1|  410|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z69661-3|CAA93490.1|  293|Caenorhabditis elegans Hypothetical
           protein F48F7.5 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
 Frame = +3

Query: 102 FNLTYEEMLVRRNDVYQHVV--NLHPGSLVPKFTVTVHIKE--TANISEL---RVPEIRT 260
           FN  + +       ++ +++  N   G+L  ++ +  HI +  T  +S+     VP I +
Sbjct: 116 FNYQFSKFANHTGALFNNLMHSNEQLGTLFQQYVLDEHIIKIKTGRLSKPATEEVPNIES 175

Query: 261 GNEVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRLMHVYAEKSKESATGENAGEGV 440
           GNEV    DD+  +  + +RE  S  +     L  ++R   V  E   E A  +N GE  
Sbjct: 176 GNEVRELIDDS-FNRYLRKRELDSTTVDVGYSLPNKRR--RVEEEDEDEEADDDN-GEST 231

Query: 441 SGQFVVQYDVDRPKDGQILVND 506
               +   DVD  ++ + L+++
Sbjct: 232 D---LEGSDVDENREEKELIDE 250


>U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical
           protein C01F1.1 protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 360 EEQKRLMHVYAEKSKESATGENAGEG 437
           E+QKRL+ +  E S + + G++ GEG
Sbjct: 203 EQQKRLLKIKDEASSDDSDGDDEGEG 228


>Z99102-1|CAB11776.1|  523|Caenorhabditis elegans Hypothetical
           protein B0331.2 protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 121 SSYVKLNITLEAASTLKVVVKWFESRALAATWAA 20
           S Y++ N+ ++    + +VV WF S  +A T AA
Sbjct: 179 SFYIRGNVGIKWGEIINIVVSWFISPIIAGTIAA 212


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
 Frame = +3

Query: 75   NVEAASKVIFNLTYEEMLVRRNDVYQHVVNLHPGSLVPKFTVTVHIKETANISELRVPEI 254
            N     + +  ++ +++ + R++++Q         +  K      +KE +    LR+  +
Sbjct: 927  NKTLRDQAVGTVSLQQLELLRSNIFQ--ARQKEAEIAAKMENIDKLKEESETEMLRIRAL 984

Query: 255  RTGNEVDATKDDAQM----SNVIIQREGTSAVITFSPDLEEQK---RLMHVYAEKSKE 407
            RT NEV +  D  +M    +N + +R+   A  T S    + K   R++H+  ++  E
Sbjct: 985  RTANEVLSNFDGHEMQPQGNNEVAERQLQLAYFTSSQQSAKAKQFERMVHLKEQRVAE 1042


>U46671-1|AAA85747.1|  364|Caenorhabditis elegans Hypothetical
           protein C14E2.2 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/79 (18%), Positives = 36/79 (45%)
 Frame = +3

Query: 114 YEEMLVRRNDVYQHVVNLHPGSLVPKFTVTVHIKETANISELRVPEIRTGNEVDATKDDA 293
           Y + L R + V   V+ L+PG    +  +   I++    +  +  E+R    +  T  + 
Sbjct: 30  YVQRLERLDQVLIQVMELNPGEFRDRQRLMQDIRDLIQETTFQAREVRVARRMVRTLHER 89

Query: 294 QMSNVIIQREGTSAVITFS 350
           +  ++I ++ G + V  ++
Sbjct: 90  ESHHLICKKAGFTTVAEYT 108


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -3

Query: 266  ISSSNFGHSQFRNICRFLNMYSNSEFRYKRTRM*INHVLVNIITADQHFFVCQIEYYFRS 87
            IS+ N  H+ + +I + L +  ++E RY       N +      A  H+F C   Y F++
Sbjct: 2342 ISTLNIAHTSYMDIFQNLAIQLDTEGRYLLFNGIANQL--RYPNAHTHYFSCVFLYLFKN 2399

Query: 86   GFNIESRCKMVRI 48
              N   + ++ RI
Sbjct: 2400 STNDTIQEQITRI 2412


>Z68222-6|CAE18046.2|  104|Caenorhabditis elegans Hypothetical
           protein ZK1251.11 protein.
          Length = 104

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +2

Query: 299 VKRYHSKRRHLCGHYVLARFRRA--KTIDARICGEIERICYRGKCGRRCLRSICC 457
           V+R   ++  LCG  VL+       K  D+    +I   C R  C    +R  CC
Sbjct: 49  VRRVPEQKNKLCGKQVLSYVMALCEKACDSNTKVDIATKCCRDACSDEFIRHQCC 103


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = +3

Query: 258 TGNEVDATKDDAQMSNVI---IQREGTSAVITFSPDLEEQKRLMHVYAEKSK---ESATG 419
           +GN  +  +   ++ +++   I  +  SA +    D++E+KR M  +AEK +   E A  
Sbjct: 637 SGNATEVKEKKKELPSIVRLRITNKYPSAFVPNKYDVQEEKRRMEAFAEKERLASERAAV 696

Query: 420 EN 425
           EN
Sbjct: 697 EN 698


>Z82053-5|CAB04833.1|  103|Caenorhabditis elegans Hypothetical
           protein T26E3.6 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +2

Query: 302 KRYHSKRRHLCGHYV---LARFRRAKTIDARICGEIERICYRGKC 427
           K Y      LCGHYV   L+ FR+    D R CG  E  C  G C
Sbjct: 23  KDYECSGTDLCGHYVCTPLSEFRKCPE-DKR-CG-FEYSCMSGVC 64


>AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical
           protein F25E5.5 protein.
          Length = 409

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 389 CGEIERICYRGKC 427
           CG+ ER+C RG+C
Sbjct: 352 CGDFERVCGRGQC 364


>AC084155-4|AAG23365.1|  410|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.3 protein.
          Length = 410

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 380 ARICGEIERICYRGKC 427
           A  CG+ ER+C RG C
Sbjct: 351 AGFCGDFERVCGRGDC 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,079,292
Number of Sequences: 27780
Number of extensions: 252932
Number of successful extensions: 754
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)