Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G20
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    28   0.76 
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   3.1  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    26   4.1  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    25   5.4  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   7.1  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   7.1  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   7.1  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   7.1  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 297 NPAVAAPILHLVSEID*TKSTELVVF-IASYGYLDHST--GGTIRVDSESTRLPAHPRVS 127
           NPA+   I H+V  ++  K  +LV++  A +G        GG I + S      + P VS
Sbjct: 681 NPAITHGISHIVGSVEIGKFADLVLWDFADFGARPSMVLKGGMIALASMGDPNGSIPTVS 740

Query: 126 PLL 118
           PL+
Sbjct: 741 PLM 743


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 463 LRNIWHVFSGECFGT--EIVVVVMEEIYFTGSRHFV 362
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = +1

Query: 133 SRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKYGSCYSWIGL*QR 312
           S + ++A     NS   + A +   +  N   K + L  +       +G+C+ WI +   
Sbjct: 119 SLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLSKIHELASNSFGACWLWIVIDDY 178

Query: 313 ER---TRSDPHKNSYPWVR*QNDGCR*SKSLP 399
            R    R+    + Y W R Q++      S+P
Sbjct: 179 NRLNLLRTFQAGSPYLWTRWQSNDPHLISSVP 210


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 398 HNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDK 517
           H N    SA  ++  ++   PQ   F+T G+   + F DK
Sbjct: 244 HRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGTFSFWDK 283


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 320  HGATLTKTHIPGFGDKMTAAGKV 388
            HG T+   HI   GD MT  G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 305 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 394
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 297 WLMTT*TDTERPSQKLISLGSVTK*RLPVKXXXXXXXXXXXVPKHSPLKTCQIFLKFRTS 476
           WL+   ++TE P+Q+L +L S++K  +                +   + T  +  KF T+
Sbjct: 192 WLLEHCSETEIPAQQLQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTN 251

Query: 477 TLS-VPEWTTCSKI 515
           T     E  +CS +
Sbjct: 252 TAKYANELVSCSML 265


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 472 VRNLRNIWHVFSGEC 428
           + N R++WH F G C
Sbjct: 126 IHNYRDLWHSFKGMC 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,770
Number of Sequences: 5004
Number of extensions: 43323
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)