Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G19
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)             29   1.2  
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               29   1.2  
SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)                28   2.8  
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)                 28   2.8  
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)                     27   4.9  
SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  

>SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)
          Length = 316

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = -1

Query: 254 RNIIGFRKV-RGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKR-----LVI 93
           R IIG R + RGN   VR + A    + +  EH+ L     VR   E I K+     +++
Sbjct: 63  RVIIGARNLDRGNAA-VRDIQASSGSQQVFVEHLDLASLSSVRKFAEVINKKEERVDILM 121

Query: 92  NNKGLKWCQIMAT 54
           NN G+ W     T
Sbjct: 122 NNAGVAWIPFKRT 134


>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 106 LAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNS 216
           LA+  +  RTRRA+KSL   L+  S + + S  LT S
Sbjct: 443 LAVKQSSPRTRRANKSLQAPLKPPSSSPRPSKALTGS 479


>SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 134 VRWTVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWISTF 3
           ++W   +I  R ++ N  +KW +     ++ I  N  +EW+  F
Sbjct: 49  IKWLRCFIVWRGIVTNSAIKWLRCFIV-WRGIVTNSAIEWLRCF 91


>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -1

Query: 266 LLLFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL-----FEARRVRWTVEWIAK- 105
           LLLF   + FR V GN+ F +       Y D++    R+     F  +   W  + ++K 
Sbjct: 388 LLLFMRNLTFRGVTGNIRFEKSGNPTNAYYDVMNFRKRVPGGKYFIEKVGFWKRDQVSKP 447

Query: 104 RLVINNKGLKW 72
           +L +N K ++W
Sbjct: 448 QLQVNGKLIQW 458


>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
          Length = 579

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 142 ASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPM 246
           A K LIC+L  S++  + S      T PL++L PM
Sbjct: 96  AFKVLICTLLFSAFRLERSPSTPPITAPLSYLPPM 130


>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
          Length = 383

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 103 LLAIHSTVQRTRRASKSLICSLRMSSYT---TKASTFLTNSTFP 225
           L A H+T+ RTR  S+S  CSLR + +    TK+    T+ T P
Sbjct: 232 LYARHNTLTRTRAPSRS--CSLRTAQHPHTGTKSPMLSTHGTTP 273


>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
          Length = 473

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 70  HHLRPLLL-ITSLLAIHSTVQRTRRASKSLICSLRMSSYTT 189
           H+  PL+  IT+  + + T+ RTR A+ ++I S    SY T
Sbjct: 224 HNATPLVQSITAPTSPNVTINRTREANSTMILSSTSVSYNT 264



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 70  HHLRPLLL-ITSLLAIHSTVQRTRRASKSLICSLRMSSYTT 189
           H+  PL+  IT+  + + T+ RTR A  ++I S    SY T
Sbjct: 35  HNATPLVQSITAPTSPNVTINRTREAKSTMILSSTSVSYNT 75



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 70  HHLRPLLL-ITSLLAIHSTVQRTRRASKSLICSLRMSSYTT 189
           H+  PL+  IT+  + + T+ RTR A  ++I S    SY T
Sbjct: 413 HNATPLVQSITAPTSPNVTINRTREAKSTMILSSTSVSYNT 453


>SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 179 EDILKEHIRLFEARRVRWTVEW-IAKRLVINNKGLKWCQIMAT 54
           E  L +HI   + RR+ +TV W I  R    +K  K C +  T
Sbjct: 325 ETELSKHIWQLKDRRINYTVSWKIIARAKAYSKESKRCNLCTT 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,150,378
Number of Sequences: 59808
Number of extensions: 183697
Number of successful extensions: 445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)