Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G19
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine r...    29   0.80 
Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal m...    27   4.3  
AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    27   4.3  
AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal m...    27   4.3  
U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna bind...    27   5.7  
Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.      26   7.5  
AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical ...    26   7.5  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    26   9.9  

>AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine
           receptor, class w protein108 protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 13/46 (28%), Positives = 29/46 (63%)
 Frame = +1

Query: 85  LLLITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTF 222
           ++++ ++L +H+ + + ++A K    SLR + +TTK   F+T + F
Sbjct: 58  VIIVLTILLLHA-LNKAKKARKKKKSSLRDTDHTTKLVVFMTAAFF 102


>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 125 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 6
           T++   K LVI  KG  W +  AT+ ++     +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 125 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 6
           T++   K LVI  KG  W +  AT+ ++     +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306


>Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical
           protein C34C12.9 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 139 RASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLNNKRC 270
           R+S     SLR    T   ST  T S+ P + + P MF N+++C
Sbjct: 77  RSSTGFYSSLRNLFSTGNPSTTTTISSIPESHINP-MFANHEKC 119


>AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform c protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 48  ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 194
           ES+ +    FE  V  +  F   F R  +  C++ P+ FF+  F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280


>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 48  ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 194
           ES+ +    FE  V  +  F   F R  +  C++ P+ FF+  F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280


>AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform a protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 48  ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 194
           ES+ +    FE  V  +  F   F R  +  C++ P+ FF+  F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280


>U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna binding
           factor protein 2 protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 154 GSLKHVESAGRSNG*PKGLLSITKASNGVRSWLLDSNGYTKTK 26
           GS KH           +   S T+++N + +W LDSNG  +++
Sbjct: 140 GSSKHYHLKYSRPALSRNSRSFTRSNNVLPTWSLDSNGEMRSR 182


>Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical
           protein F54F7.5 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 207 YKFNVPPY--FSKTNDVPKQ*EML 272
           ++FNVPPY  F + +D+P   E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472


>AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 207 YKFNVPPY--FSKTNDVPKQ*EML 272
           ++FNVPPY  F + +D+P   E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472


>AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical
           protein Y104H12D.2 protein.
          Length = 327

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 95  INNKGLKWCQIMATRFKRIYENKELEWIST 6
           I  KG KW  + A +   + EN+E E ++T
Sbjct: 152 IERKGCKWVAVEAVKHFVVEENEEKEAVAT 181


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 100 SLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTFPLT 231
           +L AIH   Q   R S  L+C  ++  ++      +++S  PLT
Sbjct: 7   TLTAIHQQQQSHNRFSNPLVCVGQLDHHSLLPDDSISSSLAPLT 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,615,154
Number of Sequences: 27780
Number of extensions: 146759
Number of successful extensions: 357
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)