Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G18
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    28   0.94 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   2.2  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   2.2  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   3.8  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   8.8  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   8.8  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 393 PAFQESSFASVPVYDISXRLDQE--PVSSAITPKSAINRRYFVPIPTIIYTSL**IWRRS 566
           P+ +  SF+S   ++   + D    P+S +I+P   +N++  +  PT  +      W+  
Sbjct: 225 PSAKNRSFSSFTSFESPMKYDDSFFPISPSISPLQKVNKQQQIESPTATFPLSKNTWKNR 284

Query: 567 F 569
           F
Sbjct: 285 F 285


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 309 YEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDIS 443
           Y F+T L+  ++++ +E + +    +++P    S    VPVY IS
Sbjct: 558 YRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHIS 602


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 429 QGPMQTKILEKPVYQQIPRSLHSFHLVSLLPKTSE 325
           +GP+ + I + PV       +H+F L  L+P  SE
Sbjct: 177 EGPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSE 211


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 189 DAPMGSFHVFLQERGPSVSCQNVSWYIHRLKLHRIQVLE 73
           DAP  + ++ L     S+  + +SWY+  ++LH +Q +E
Sbjct: 200 DAPNSNRNLLLNN---SMLQEKISWYLDTVELHLLQEIE 235


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -2

Query: 369 LHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLRREYQRHLFRPII 214
           L+ + ++   P+ S   ++  S+   K SF   FP SC + +    +  P+I
Sbjct: 27  LNDYEILLESPEDSHAYRVSKSKTLEKASFTKVFPPSCTQLDVFSTICAPLI 78


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 75   ECLALLDYLSYVQQQPVQNQRRKCE 1
            +C ALL  L + ++  V+NQR K E
Sbjct: 978  QCAALLSCLVFQEKSEVENQRMKEE 1002


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,305
Number of Sequences: 5004
Number of extensions: 56760
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)