Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G15
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   3.6  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   4.7  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   8.2  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         24   8.2  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 164 LLLKLVPTLNLYIARHTLRIEDN 96
           L+ KL   + +YI R  LR EDN
Sbjct: 147 LIAKLTDNIQIYIERIHLRFEDN 169


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 289 IRRHREHNCRRCWIFL 336
           +R HR+++ RRC +FL
Sbjct: 262 LREHRDNSIRRCIVFL 277


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 156 KACTYIKSLHCTTHIKDRRQQQTGQPSFLQINSIYE 49
           KAC    +L CT  +KD ++    +  F+ ++  Y+
Sbjct: 57  KACAS-NNLECTYPVKDEKEMDYSKDYFIDLSKRYK 91


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 268 LHPL*FVAQ-DPKRKLL*LFSSMGWHCNLLFLAILVCY*SLYLH 140
           L+P  F +Q  P   L  LFS +G   ++    IL  Y S+YLH
Sbjct: 38  LYPKLFDSQRSPSPFLRWLFSVLGVLMSMDVFCILYAYPSVYLH 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,360
Number of Sequences: 5004
Number of extensions: 34773
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)