Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G15
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81070-1|CAB02997.1|  137|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z83230-5|CAB05745.1|  304|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z81070-1|CAB02997.1|  137|Caenorhabditis elegans Hypothetical
           protein F26E4.2 protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 175 QEKADYNAIPLKKRVKEVFFSDPGQQIIKGVIAR 276
           QE  D     +KKR  +V +S  G++++ GV+ +
Sbjct: 23  QEDGDEQIFDVKKRKPQVTYSGDGRRMLDGVVEK 56


>Z83230-5|CAB05745.1|  304|Caenorhabditis elegans Hypothetical
           protein F56A8.5 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 182 FSCHISLLLKLVPTLNLYIARHTLRIEDNNKLVNLHFY 69
           F+    ++ + + TLNLY+   ++ I +N  ++ L F+
Sbjct: 28  FALSSPIVREFIKTLNLYVEFFSVEINNNRCVIRLKFF 65


>Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK863.5 protein.
          Length = 347

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 206 NGMAL*SAFSCHISLLLKLVPTLNLYIARHTLRIEDNNKLVN 81
           NG A    F C  S LL L+P +  Y+  + LR + + KL N
Sbjct: 173 NGHADLREFPCLFSYLLMLIPIIPGYLIMYGLRRKIHFKLRN 214


>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 151 SFNNRLIWQEKADYNAIPLKKRVKE 225
           S++N  +WQ K+D N   +  +VKE
Sbjct: 644 SYSNAHMWQHKSDINVASVHVQVKE 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,782
Number of Sequences: 27780
Number of extensions: 194647
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)