Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_G14
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0256 + 21331396-21332268 33 0.13
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 31 0.54
03_01_0178 + 1437263-1438017,1438754-1438858,1438950-1439072,143... 28 3.8
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 28 5.0
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112... 27 6.6
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 27 6.6
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 6.6
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 27 8.8
10_08_0779 - 20497718-20498773 27 8.8
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 27 8.8
04_03_0576 + 17374494-17374538,17374645-17374902 27 8.8
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 27 8.8
>02_04_0256 + 21331396-21332268
Length = 290
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -3
Query: 175 SESTRLPAHPGVAPLLRLIIILFDVVARLFNEHVPAVDADQENR 44
S + RL AHPG P +RLI++ D +A LF A AD + R
Sbjct: 139 SRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 31.1 bits (67), Expect = 0.54
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 137 PTAPADHHTVRCSSQALQRARTG 69
PTAP HH++ CS RA TG
Sbjct: 44 PTAPPKHHSLSCSGSQAPRATTG 66
>03_01_0178 +
1437263-1438017,1438754-1438858,1438950-1439072,
1439908-1440078,1440163-1440292,1440372-1440581,
1440675-1440773
Length = 530
Score = 28.3 bits (60), Expect = 3.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 137 GNSRVRRQAGALTINSDGTS--GAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLA 310
G++R +G S G+ GA + +G+ ++S LG +L AT GLA
Sbjct: 160 GSTRSTAASGMSATTSGGSERDGATPRSTASGSAGPEVSHLGWGHWFTLRELEEATDGLA 219
Query: 311 YDNVNGHG 334
+NV G G
Sbjct: 220 EENVIGEG 227
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 53 LVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGAIVKV 214
L G+ SR V P + ++ Y D+ EQW R R + L I+ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>10_08_0206 +
15809261-15809390,15810655-15810763,15811237-15811265,
15811721-15813048
Length = 531
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -3
Query: 505 QSATNSVEIGNLRNAG---HVLSSESLCAEVMVIIVEQVDFASGGQLV 371
Q A+ ++G L G H+ +S+ + A+ + ++ EQ+D+A+ L+
Sbjct: 416 QLASTPADVGLLTKKGILVHLENSDEMAAKKLSMLCEQIDYATEDYLI 463
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.5 bits (58), Expect = 6.6
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 161 AGALTINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 334
AG + + G V + G +NH +S +G GA TAG AY+ +N G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -1
Query: 327 PLTLSYANPAVAAPNFIWLVRSTEPRALSLWFSL-PVIGTLTIAPEVPSELIVRAPACRR 151
P TL +PA AA + IW +P ++ S P + APE P L A R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485
Query: 150 T 148
+
Sbjct: 486 S 486
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 190 TVRVDSEST-RLPAHPGVAPLLRLIIILFDVVA 95
T+R+D+ S + A P +AP L +I+ L VVA
Sbjct: 167 TLRIDNRSEPKFKASPAMAPRLVIILFLLAVVA 199
>10_08_0779 - 20497718-20498773
Length = 351
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 48 FSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAGKRVLSLSTL 185
++W S A TC L L+ S++++ S G + R+L L+ L
Sbjct: 106 WAWPPSLASTCGLARLSRDDASLLLNGSWVMVAGDSQARLLVLALL 151
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 368 GDKLTAAGKVNLFHNDNHDLSAKAFATKNMPSIPQ 472
GD+++AA + +D+ +S K+F T MP PQ
Sbjct: 49 GDEISAAAEDENDDDDDGTVSVKSFETCAMPQEPQ 83
>04_03_0576 + 17374494-17374538,17374645-17374902
Length = 100
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 396 STCSTMITMTSAQRLSLLRTCPAFLKFPISTLLVAD 503
+T +T T+ A+ + L T P + F STLL+AD
Sbjct: 63 ATRATAETLPQAKEVDLSPTAPVEVLFAASTLLMAD 98
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 210 LTIAPEV-PSELIVRAPACRRTLELPHC 130
+ IA +V P EL+V PA R +E+P+C
Sbjct: 132 VVIAHDVDPIELVVWLPALCRKMEIPYC 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,873
Number of Sequences: 37544
Number of extensions: 314844
Number of successful extensions: 949
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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