Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_G13
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.61
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.5
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 3.2
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 3.2
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 26 4.3
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 7.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 7.5
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 25 9.9
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.9
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 25 9.9
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 0.61
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 469 PQRNATKTSK*NPPKTRVAGIVSKRT 546
PQR A TS +PP T+ G SK T
Sbjct: 23 PQRAAVDTSNVSPPSTQTGGYASKDT 48
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 369 EKSAWSECNANGE-MTRTDTLKANSDSSCEPSRRATKKCNKNKQVKSAKDKGRRNR 533
EK+ E N E + T + D+S +PS+ A NKN + + K N+
Sbjct: 66 EKNPIEEANEENESVAATSNERQQHDASNQPSQAAQTTINKNTESATPKTVNEINK 121
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 333 TVQKKCKKACRYEKSAWSECNANGEMTRTDTLKANSDSSCEPSRRATKKCNKNKQVKSAK 512
TV++K K+A N+ +T +D A S S C +++ K C++ + +
Sbjct: 309 TVERKGKEASEVNP------NSTSSVTFSDFAAAISRSRCSRCKKSKKGCDRQRPCGRCR 362
Query: 513 DKG 521
D G
Sbjct: 363 DAG 365
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 540 FTDDSGDPCLWRISLACFCCI 478
F+D +G P +S C CCI
Sbjct: 472 FSDGTGSPQSLEVSFYCLCCI 492
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 195 SVRGAK-NRDPCRYIRGAWSECDSKTNIKSRKLTLKKGD 308
+V G + N P +GA CD +N SRK+ K D
Sbjct: 169 TVHGVEFNEPPTNIPKGAIRVCDVSSNFISRKIDFTKHD 207
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 554 NLWVRLLTIPATLVFGGFHLLVFVAFLCGTPA 459
+LW+ LL +P G +H V CG PA
Sbjct: 462 SLWLVLLVVPLLGFVGFWHQEVQRVGFCGVPA 493
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 459 SRRATKKCNKNKQVKSAKDKGRRNRQ*THPE 551
SRR ++ + K K+ KDKG N Q T P+
Sbjct: 1573 SRRGSQNRDSKKTGKARKDKGINNNQ-TSPQ 1602
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 24.6 bits (51), Expect = 9.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 94 ICCGLWQGFCCC 129
+CCGL G CC
Sbjct: 69 LCCGLLTGLACC 80
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 249 SECDSKTNIKSRKLTLKKGDPANCDTVKTVQKKCKKACRYEKSAWSECNANGEMTRTDT 425
S C ++K+ TL + P +C+ + C+ + R+ S N+NG + R D+
Sbjct: 321 SSCSLSVDVKA---TLLETTPPSCEVSYNLLLTCRSSNRFRLFPASTPNSNG-LCRNDS 375
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 545 VRLLTIPATLVFGGFHLLVFVAFLCGTPARFARGVTVG 432
+++ + ++VFG H+L FVA+L R V++G
Sbjct: 151 IKIKSTILSIVFGVLHILSFVAYLIAFFPFGTRTVSLG 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,744
Number of Sequences: 5004
Number of extensions: 35712
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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