Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_G13
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0942 - 26185898-26185932,26186004-26186379,26186473-261866... 29 1.9
10_08_0412 - 17729765-17730283,17731256-17731726 29 3.3
07_03_0632 - 20112297-20116562 29 3.3
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 29 3.3
12_01_0854 - 7999862-8000075,8000160-8000296,8000980-8001069,800... 28 5.8
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 28 5.8
05_03_0174 + 9217679-9217799,9217981-9218180 28 5.8
03_01_0652 + 4771551-4771821,4771931-4772038,4772744-4773024,477... 28 5.8
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710... 28 5.8
07_01_0632 + 4729426-4731300 27 7.6
02_01_0415 + 3037720-3039849 27 7.6
>06_03_0942 -
26185898-26185932,26186004-26186379,26186473-26186614,
26186694-26186820,26186870-26186927,26187520-26187551,
26187848-26188454
Length = 458
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 381 WSECNANGEMTRTDTLKANSDSSCEPSRRATKKCNKNKQVKS 506
+ ECN + +DT ANS++ TK C+K K+
Sbjct: 400 FKECNEAPTLCTSDTSNANSEADLSADELRTKICSKEMAAKA 441
>10_08_0412 - 17729765-17730283,17731256-17731726
Length = 329
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Frame = +3
Query: 261 SKTNIKSRKLTLKKGDPANCDTVKTVQKKCKKACRY-------EKSAWSECNANGEMTRT 419
SKT +S + PA+ D +K ++K + + E A C ++ R
Sbjct: 30 SKTRYRSEPVLESNKQPADLDQIKPAKRKRGEQVKIVDEEDADELGALQPCQGWKKVRRK 89
Query: 420 DTLKANSDSSCEPSRRATKKCNKNKQVKSAKDKGRRNRQ*THPEI 554
D++ E ++ K K + + K+ G+R PE+
Sbjct: 90 RLDAVKDDNNGENAKITNKNARKVSRRSAPKNSGKRKLDNVEPEV 134
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = +1
Query: 37 IXAKQGSYHVNTVKTWRTGICCGLWQGFCCCRSHWCQ 147
+ K+G +H T+ +R C W+G+ W +
Sbjct: 1321 VKKKRGEWHKETINEYRQKKTCEFWEGWLKYEEEWVE 1357
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +3
Query: 270 NIKSRKLTLKKGDPANCDTVKTVQKKCKKACRYEKSAWSECNANGEMTR-TDTLKANSDS 446
N+ R + L K A + + T+Q + Y+ A NGE+ R + S S
Sbjct: 571 NVDRRYVDLDKSWFARKEELTTLQLGTWRDHGYDPRAHHVELINGELLRGIGACRNMSTS 630
Query: 447 SCEPSRRATKKCNKNKQVKSAKDKGRRNRQ 536
+C + + K + +K+A D+G R RQ
Sbjct: 631 TCRDATFSAKCPGDREALKAAGDQGIRGRQ 660
>12_01_0854 -
7999862-8000075,8000160-8000296,8000980-8001069,
8002179-8002228,8003072-8003174
Length = 197
Score = 27.9 bits (59), Expect = 5.8
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Frame = +3
Query: 183 VLIRSVRGAKNRDPCRYIRGAWSECDSKTNIKSRKLT----------LKKGDPANCDTVK 332
VL+ RG + RY + + + SK + +KL L + D +N T
Sbjct: 58 VLLHEWRGRITQPMLRYFKDKF-QIKSKQRSRQKKLKAYDLSMLSEFLPETDASNLHTEA 116
Query: 333 TVQKKCKKACRYEKSAWSECNANGEMTRTDTLKANSDS--SCEPSRRATKKCNKNKQVKS 506
+ K K+A ++A + D A S +P A K+ N KQ K
Sbjct: 117 KLNCKSKQALVQREAAQLNAVLTNPQFQLDPFAAIHQHLLSTQPPS-ARKESNSAKQGKD 175
Query: 507 AKDKGRRNRQ 536
KDK R+N++
Sbjct: 176 PKDKKRKNKK 185
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +3
Query: 210 KNRDPCRYIRGAWSECDSKTNIKSRKLTLKKGDPANCDTVKTVQKKCKKACRYEKSAWSE 389
++RD R G D + + + +G A D K +K K ++S +
Sbjct: 58 RDRDRHRGGGGGREHRDRDDGKEKERSSRSRGKDAEKDRGKDGEKDRSKEAEKDRSRDRD 117
Query: 390 CNANGEMTRTDTLKANSD--SSCEPSRRATKKCNKNKQVKSAKDKGRRNR 533
+ + E R + + SS P RR T++ ++++ +++ RNR
Sbjct: 118 RDRDSERDRRRERDSGRERRSSSRPERRRTEEEEMVRELQKERERSDRNR 167
>05_03_0174 + 9217679-9217799,9217981-9218180
Length = 106
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 234 IRGAWSE-CDSKTNIKSRKLTLKKGDPANCDTVKTVQKKCKKACRY 368
I G WS+ S+ NI + DP+N D + K AC Y
Sbjct: 47 ILGRWSKKASSEWNISGEPCSGVASDPSNWDNFPNINPLIKCACTY 92
>03_01_0652 +
4771551-4771821,4771931-4772038,4772744-4773024,
4773115-4773369,4773451-4773563,4773640-4773735,
4773844-4773997,4774380-4774697
Length = 531
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 318 CDTVKTVQKKCKKACRYEKSAWSECNANG 404
C+TV+ + + + R+ + WS CNA+G
Sbjct: 446 CNTVRGSESELINSGRWSTNLWSGCNASG 474
>01_01_0903 -
7103091-7103120,7104092-7104651,7105208-7105328,
7105545-7106567
Length = 577
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 279 SRKLTLKKGDPANCDTVKTVQKKCKKACRYEKSAWSECNANGE 407
+RKL++ D C T T+ K +K R ++ + C+ GE
Sbjct: 532 TRKLSIYTEDDDGCTTKDTLYMKLEKDLRCTDASINSCSGRGE 574
>07_01_0632 + 4729426-4731300
Length = 624
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 52 PVWLLCLYGYVGVGT 8
PVWL+CLY +VG +
Sbjct: 138 PVWLVCLYVFVGANS 152
>02_01_0415 + 3037720-3039849
Length = 709
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 52 GSYHVNTVK-TWRTGICCGLWQGFCC 126
G H N + +WR GI C W+G C
Sbjct: 39 GLSHDNGIAMSWRNGIDCCAWEGITC 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,900
Number of Sequences: 37544
Number of extensions: 239664
Number of successful extensions: 785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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