Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G13
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    31   0.42 
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    31   0.42 
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    30   0.97 
AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical ...    29   1.7  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
 Frame = +3

Query: 213  NRDPC-RYIRGAWSECDSKTN--IKSRKLTL-----KKGDPANCDTVKTVQKKCKKACR- 365
            NR PC R++ G WSEC    +  +K R         ++   + C   +T +   + AC  
Sbjct: 1072 NRIPCPRWVYGHWSECSRSCDGGVKMRHAQCLDAADRETHTSRCGPAQTQEHCNEHACTW 1131

Query: 366  YEKSAWSECNA 398
            ++   WS+C+A
Sbjct: 1132 WQFGVWSDCSA 1142


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
 Frame = +3

Query: 213  NRDPC-RYIRGAWSECDSKTN--IKSRKLTL-----KKGDPANCDTVKTVQKKCKKACR- 365
            NR PC R++ G WSEC    +  +K R         ++   + C   +T +   + AC  
Sbjct: 1072 NRIPCPRWVYGHWSECSRSCDGGVKMRHAQCLDAADRETHTSRCGPAQTQEHCNEHACTW 1131

Query: 366  YEKSAWSECNA 398
            ++   WS+C+A
Sbjct: 1132 WQFGVWSDCSA 1142


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 17/74 (22%), Positives = 37/74 (50%)
 Frame = -3

Query: 511 LADFTCLFLLHFFVARLLGSQEESLLAFNVSVLVISPLALHSLQADFS*RQAFLHFFCTV 332
           L +F  ++L  FFV  L+G+ ++ +L F++  ++ S + + +     +   + + F    
Sbjct: 20  LTNFFVIYLTTFFVKNLIGTYKKMILIFSLLGILFSGIEILARPFAHNYNNSLMFFSLNF 79

Query: 331 FTVSQLAGSPFLRV 290
           +T SQ     F+ V
Sbjct: 80  WTSSQTLPEFFISV 93


>AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical
           protein ZC190.8 protein.
          Length = 227

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 264 KTNIKSRKLTLKKGDPANCDTVKTVQKKCKKACRYE-KSAWSECNANGEMTRTDTLKANS 440
           K+N KS   + + G P N     T +K  KK+ R + K   ++ N   E T   T K   
Sbjct: 158 KSNRKSTDSSTELGSPTNSQYSTTTRKSSKKSTRSDRKMEKTQRNEKSEHTEEQTDKTEK 217

Query: 441 DSSCEPSRR 467
                 SR+
Sbjct: 218 TVKSTASRK 226


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 348 CKKACRYEKSAWSECNANGEMTRTDTLKANSDSSCEPS--RRATKKCN 485
           C  A R   +  SEC  + E T+T      + +SC P+    + ++CN
Sbjct: 29  CYPANRTSATTCSECTCSDESTQTSDTTCTAPTSCSPNPCTLSNQQCN 76


>Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B6.4 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 330 KTVQKKCKKACRYEKSAWSECNANGEMTRTDTLKANSDSSCEPSRRATKKCNKNKQVKSA 509
           KTV  K K   +  KSA S  +  G    + + K+   S  + S+R++K   K    KS 
Sbjct: 69  KTVHAKNKNKNKSSKSAKSSKSTRG---ASKSGKSRRSSKAKHSKRSSKSSKKGTSGKSG 125

Query: 510 KDKGRR 527
           K   +R
Sbjct: 126 KGSSKR 131


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 97  CCGLWQGFCCCRSHWC 144
           CCG   G CCCR   C
Sbjct: 79  CCGCGCGCCCCRPRCC 94


>AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical
           protein T21E3.1 protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +3

Query: 330 KTVQKKCKKACRYEKSAWSECNANGEMTRTDTLKANSDSSCEPSRRATKKCNKNKQVKSA 509
           K+ +KK KK  + ++ +    N N E    +  +    +   PS+    K       +  
Sbjct: 74  KSFRKKVKKLAQKDRRSKERLNGNSEEDAIEVPRGAPSTYAAPSKLRKSKALDCLVSEKP 133

Query: 510 KDKGRR 527
           KD+GRR
Sbjct: 134 KDEGRR 139


>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/61 (21%), Positives = 27/61 (44%)
 Frame = +3

Query: 351 KKACRYEKSAWSECNANGEMTRTDTLKANSDSSCEPSRRATKKCNKNKQVKSAKDKGRRN 530
           ++ C Y+++     N+     R+D+ +++  S+  P RR   K     +  S      R+
Sbjct: 129 RRYCAYQRAKQVRSNSQRRRRRSDSQESSKRSASPPVRRGRSKSRSRSRSPSRSRSRSRS 188

Query: 531 R 533
           R
Sbjct: 189 R 189


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/61 (21%), Positives = 27/61 (44%)
 Frame = +3

Query: 351 KKACRYEKSAWSECNANGEMTRTDTLKANSDSSCEPSRRATKKCNKNKQVKSAKDKGRRN 530
           ++ C Y+++     N+     R+D+ +++  S+  P RR   K     +  S      R+
Sbjct: 129 RRYCAYQRAKQVRSNSQRRRRRSDSQESSKRSASPPVRRGRSKSRSRSRSPSRSRSRSRS 188

Query: 531 R 533
           R
Sbjct: 189 R 189


>Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical
           protein T23D5.6 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 508 ADFTCLFLLHFFVARLLGSQEESLLAFNVSVLVISPL 398
           + FT +FL  FFV + LG+ +  +L F++  +  + L
Sbjct: 22  SQFTLIFLTPFFVRKDLGAYKHLILLFSILGIAFASL 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,777,936
Number of Sequences: 27780
Number of extensions: 212582
Number of successful extensions: 710
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)