Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G12
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    25   2.5  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   2.5  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   3.4  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 265 KIIYGRNDGLWPSVNAMILISIHRVKDSIEC 173
           K++Y  NDG++ S+N ++    H V   ++C
Sbjct: 323 KVMYYVNDGVYGSLNCILFDHQHPVARVLKC 353


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 110 ELEKVLHDKNFDPELKPYLEEAFNAI 187
           E   +   K   PELKP L EAF  I
Sbjct: 531 ERSSISPSKPLSPELKPLLNEAFQDI 556


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 107 DELEKVLHDKNFDPELKPYLE 169
           D L++V HD   D ELK +LE
Sbjct: 303 DTLKQVQHDAENDEELKDWLE 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,041
Number of Sequences: 5004
Number of extensions: 21249
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)