Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G10
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    86   3e-18
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    86   3e-18
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   0.72 
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    27   1.7  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    26   2.9  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   2.9  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   6.7  
SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    25   6.7  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   8.9  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   8.9  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.9  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.9  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.9  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.9  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 86.2 bits (204), Expect = 3e-18
 Identities = 38/65 (58%), Positives = 54/65 (83%)
 Frame = +2

Query: 20  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 199
           ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEV-GVPNLQVIKACQSLDSRGYLKTRY 59

Query: 200 AWRHF 214
            W  F
Sbjct: 60  NWGWF 64



 Score = 74.5 bits (175), Expect = 8e-15
 Identities = 47/108 (43%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
 Frame = +3

Query: 159 CNHLNLEDMLRNSSHGG-ILLVLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAV 335
           C  L+    L+   + G     LTNEG+EYLR +LHLP E+VPAT KR VR    R    
Sbjct: 46  CQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---A 102

Query: 336 GRPDAPARTAEDRSAYRRAPPAGAPHDKKAD-VGPGSADVEFRGGFGR 476
           GRP+   R++   + YRRA       +KK D   PG     FRGGFGR
Sbjct: 103 GRPEPRERSSAADAGYRRA-------EKKDDGAAPGGFAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 38/65 (58%), Positives = 53/65 (81%)
 Frame = +2

Query: 20  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 199
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEV-GVPNLQVIKACQSLDSRGYLKTRY 59

Query: 200 AWRHF 214
            W  F
Sbjct: 60  NWGWF 64



 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 45/107 (42%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
 Frame = +3

Query: 159 CNHLNLEDMLRNSSHGG-ILLVLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAV 335
           C  L+    L+   + G     LTNEG+EYLR +LHLP E+VPAT KR VR    R    
Sbjct: 46  CQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---A 102

Query: 336 GRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGR 476
           GRP+   R + D + YRRA        K     P      FRGGFGR
Sbjct: 103 GRPEPRERASAD-AGYRRA------EKKDEGAAPSGFAPSFRGGFGR 142


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 331 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 432
           Q AGL+  HE L+  ++  AH +  LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 198 SHGGILLVLTNEGIEYLRIFLHLPPEIVPATLKRSVRTE 314
           +HGG+L  +  EG  YL  ++     + P  L R + T+
Sbjct: 90  THGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTD 128


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 481 RPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGAS 344
           +PLP PP NS+     P SA               +++S V +G+S
Sbjct: 89  QPLPLPPRNSSLYARFPLSAGAGASSHSEETTPSHEVTSNVSSGSS 134


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 339 RPDAPARTAEDRSAYRRAPPAGAPH 413
           +P  P +     + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 237 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 341
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 321 RRGAVGRPDAPARTAEDRSAYRR-APPAGAPHDKKADVGPGSADVEFRG 464
           RRG V   D     A     Y R AP +G       D G G  D ++RG
Sbjct: 37  RRGKV-LVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTGAGVIDADYRG 84


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 139 VRDLLEIWMFGCMVVFLSYHDSLLE 65
           + +  +IW FGC +  + +H S  E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 319 TVSVRTDLFRVAGTISGGKCRKILRYSIPSFVNTSKMPPCELFLNISSRFK*LHSF 152
           T S +  + RV  T  G    ++ R  IP+ + +    P E FL  +S    +H F
Sbjct: 184 TASAKGTVIRVITTSDGELVTELRRGYIPASIVSISFHPVEPFLACASENGTIHVF 239


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +3

Query: 267 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 410
           PP   P +   S    T    A     APA  A    AY  AP    P
Sbjct: 58  PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = +3

Query: 267 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA-GAPHDKKADVGPGS 443
           P    P+    S R  T     V  P +PAR     SAY  APPA G  +      G  S
Sbjct: 281 PYASTPSAAVGSSRGSTPASATV--PISPARGFPTTSAYNPAPPAYGMANPAYGSTGIRS 338

Query: 444 ADVEFRG 464
           + +   G
Sbjct: 339 SSIPSSG 345


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 270 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 377
           P I P ++   V   TVR G+   PD P+ +   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -1

Query: 478 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVSVRTD 299
           P+P  P++ + A+P P S  LS               SAV   +S +P A    VS   D
Sbjct: 315 PVPMSPISISPAKPSPQSPKLS--------------QSAVGHPSSSIPAAAMHKVSYSDD 360

Query: 298 LFR 290
           L R
Sbjct: 361 LMR 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,558
Number of Sequences: 5004
Number of extensions: 39214
Number of successful extensions: 150
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)