Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G10
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...    89   2e-18
Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    27   6.0  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 39/65 (60%), Positives = 50/65 (76%)
 Frame = +2

Query: 20  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 199
           M +PK +   IYEYLF EGV VAKKD++A  HP++E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 200 AWRHF 214
           AWRH+
Sbjct: 61  AWRHY 65



 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 39/90 (43%), Positives = 45/90 (50%)
 Frame = +3

Query: 222 LTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 401
           LT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR AYR     
Sbjct: 69  LTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDREAYRT---- 123

Query: 402 GAPHDKKADVGPGSADVEFRGGFGRGRSAP 491
               +K  + GPG A V +R GFGRG   P
Sbjct: 124 ----EKVTEAGPGGAPV-YRAGFGRGAPPP 148


>Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical
           protein F58D12.1 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 487 ADRPLPKPPLNSTSAEPGPTSA 422
           +DRP P+PP +S S+ P P SA
Sbjct: 45  SDRP-PRPPSSSASSSPAPGSA 65


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +3

Query: 327 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 473
           G VG P AP +  +   A   A P G P    A   PG A     G  G
Sbjct: 259 GNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGAPGHPGQAGSSLPGAPG 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,569,441
Number of Sequences: 27780
Number of extensions: 229369
Number of successful extensions: 945
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)