Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G09
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    29   0.40 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    28   0.71 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   1.6  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   2.9  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   3.8  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   5.0  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   6.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 453 FRCLGLGHTSPVCPSGSERGSQSFRCGEQGYKVVHC 346
           F C   GH    CP   +  S  FRCG + + +  C
Sbjct: 80  FACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNAC 115


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 453 FRCLGLGHTSPVCPSGSE--RGSQSFRCGEQGYKVVHCRGEAERN 325
           + C   GH    CPS     +G++ ++CG  G+    CR   +++
Sbjct: 61  YACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQS 105


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 4   TSVAWNSNNYIPRDSIYSQTRCNLSHYQYIHIYTLYLSHP 123
           +SV  N +N +PR  +YS T       + I  +TL +SHP
Sbjct: 305 SSVYMNGSNSVPRFILYSTTHI-APETEIIGDWTLDISHP 343


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 25  NNYIPRDSIYSQTRCNLSHYQYIHIYTLYLSHPVPSRPPPEEMVTPARPGHL 180
           +NY P ++  ++T  N  + Q+  +  L     +PS P P +   P  PG L
Sbjct: 424 DNYEPDENPLTETLANAHNPQFSGVLNLPGLGTMPSFPSPYQHGQPQIPGML 475


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 28  NYIPRDSIYSQTRCNLSHYQYIHIYTLYLSHPVPSRPPPEEMVTPARPGHLLDSF 192
           ++  R  I S     LS Y Y+ +   YL H +     P  +++P +   ++D F
Sbjct: 194 HWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGF 248


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 88  YIHIYTLYLSHPVPSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSE 240
           Y++ YT Y S P P +   +     + P    +  P   L + +R+ P SE
Sbjct: 230 YLYDYTFYFSDPSPKKYAADAF---SLPKLFFEGVPIKRLHIHVRRFPISE 277


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 217 IRQCPDSEKTLHPAILALIGLNGD 288
           +R+CPD ++ L  +IL  I ++GD
Sbjct: 431 LRECPDIDEELGKSILREIVVSGD 454


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +1

Query: 127  PSRPPPEEMVTPARPGHLLDSFPTPSLGLGIRQCPDSEKTLHPA 258
            P  P P   V P  P       PTPS GL     P ++    PA
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,586
Number of Sequences: 5004
Number of extensions: 58254
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)