Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G08
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0614 + 4448129-4448157,4448733-4449231,4449512-4449550,444...    27   7.6  

>06_01_0614 +
           4448129-4448157,4448733-4449231,4449512-4449550,
           4449590-4449802,4449941-4450227,4450456-4450567,
           4451515-4451751,4451857-4451957,4452285-4452384,
           4452509-4453141
          Length = 749

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +1

Query: 106 LPELKRCCFCLPLRYGLLAWSYL-----KLAVGVAAMFYFIIILKEAVSLYVTYGYNSXX 270
           LP+LKR    L L++ ++ WS +      L+     +   I + +  + LY+ +  NS  
Sbjct: 174 LPQLKRASALLYLKFEIIIWSVIPSVKYSLSEHDDDILLLIALFQYVLRLYLVFSLNSKI 233

Query: 271 XXXXXXXXXXXXXXXXDNMFCLIFIISAH 357
                            N+  L+++I++H
Sbjct: 234 VEVTGAFSKTAWQGAAYNL--LLYMIASH 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,420,712
Number of Sequences: 37544
Number of extensions: 123213
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)