Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G07
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.50 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 335 PASVVKPVFQVLMAGQDLMECQES 406
           P ++ K    V+++G+DLM C ++
Sbjct: 181 PTAIQKYAIPVILSGRDLMSCAQT 204


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 407 NFPGIPLSPGRPSRPGKPVSPRSPGRISDGSRPSP*SP 294
           N P +  SPG PS P   +S      +S GS   P SP
Sbjct: 113 NVPPLTPSPGPPSHPYTVISNGYSSPMSSGSY-DPYSP 149


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 95  PGSPKSPLYPFNPGAPSI 42
           P  P  P YPF PG  ++
Sbjct: 202 PLQPFPPPYPFYPGTSAM 219


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.150    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,868
Number of Sequences: 336
Number of extensions: 2172
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)