Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G07
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    30   0.23 
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    29   0.70 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.70 
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    27   2.8  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.0  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   6.5  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   6.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.7  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   8.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -1

Query: 410 PNFPGIPLSPGRPSRPGKPVSPRSPGRISDGSRPS----P*SPFIPLGPA 273
           P  P  P+ P  PS P  PV+P +P   S   RP+    P +P +P  PA
Sbjct: 590 PQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPA 639


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 373 GRPGLNGMPGKFGPNGIPGKKGEIGDIG--PMGSI 471
           G  GLNG PG  GP G PG+    G  G  P G I
Sbjct: 72  GEEGLNGQPG--GPGGGPGEGFPGGGFGFDPFGDI 104


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 404 FPGIPLSPGRPSRPGKPVSPRSPG 333
           FPG P  P  P  PG    P +PG
Sbjct: 539 FPGYPAVPAMPGIPGATAPPGAPG 562



 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 358 FPGLDGRPGLNGMPGKFGPNGIPG 429
           FPG    P + G+PG   P G PG
Sbjct: 539 FPGYPAVPAMPGIPGATAPPGAPG 562



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 25  IPGARGMEGAPGLKGYRGDLGEPGIAISPKGQRGERGWPGIEGLKGEQGENGEFGLDG 198
           IPGA GM   P L   +  +  PG+A+ P       G+P +  + G  G     G  G
Sbjct: 508 IPGAPGM---PNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 116 PFGLIA-IPGSPKSPLYPFNPGAPSIPRAPG 27
           P G+ A  PG P  P  P  PGA + P APG
Sbjct: 532 PPGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = +1

Query: 28  PGARGMEGAPGLKGYRGDLGEPGIAISPKGQRGERGWPGIEGLKGEQGENGEFGLDGFTG 207
           P  + M  A   KGYR       I +       E  W  I+  + E GEN E  L  F G
Sbjct: 224 PSPQQMYNAMWRKGYRDSGENVPIMVQVHNFLNEGAWSEIKAWEREAGENTEPKLLRFEG 283


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -1

Query: 113 FGLIAIPGSPKSPLYPFNPGA-PSIP 39
           FG +  P  P  P  PFNP A P  P
Sbjct: 160 FGNLPNPAMPPIPFLPFNPAAQPPFP 185


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -1

Query: 395 IPLSPGRPSRPGKPVSPRSPGRISDGSRPSP*SP 294
           IP+ P  P   G P  P  PG    G  P P  P
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 104  IAIPGSPKSPLYPFNPGAPSIPRAP 30
            +A+P  P +P   FNP A   P AP
Sbjct: 1612 LAVPAVPSAPSNHFNPFAKMQPPAP 1636


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 13  GYQGIPGARGMEGAPGLKGYRGDLGEPGI 99
           GY GI  A GM G       +G   EPGI
Sbjct: 209 GYNGIVFAYGMTGTGKTYSMQGTENEPGI 237


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 401 PGIPLSPGRPSRPGKPVSPRSPGRI 327
           P  PLS    ++ G+PVS RSPG+I
Sbjct: 256 PSAPLSI--VAKQGEPVSRRSPGKI 278


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 314  YFHLIFYPASVVKPVFQVLMAGQDLMECQESLVLTA 421
            Y   ++Y A +V+ ++ +L     L++C ES+   A
Sbjct: 1630 YLTQLYYTADIVRNLWILLSQRNSLLKCMESVEFEA 1665


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 395 IPLSPGRPSRPGKPVSPRSPGRISDGSRPSP*SP 294
           I  +P  PS P KP +   P   S  S PSP +P
Sbjct: 396 INFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTP 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.150    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,274
Number of Sequences: 5004
Number of extensions: 36062
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)