Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G04
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0073 + 17669311-17671635                                         29   1.8  
05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827...    28   5.4  
08_02_0893 + 22327485-22327671,22327756-22328627                       27   7.1  
08_02_0482 - 17643603-17643955,17644024-17646604                       27   7.1  
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    27   9.4  
01_06_0052 - 25994156-25994485,25996861-25996878,25997668-25997880     27   9.4  

>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 147 TCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNNLKNE 37
           TC   L  MH+    + P++  VH LS++  +NL+ +
Sbjct: 495 TCSSLLNMMHLYSQPLLPKMHYVHPLSVMQVDNLRRQ 531


>05_03_0085 -
           8271718-8272005,8272110-8272393,8273610-8274012,
           8274792-8274816,8275686-8276149
          Length = 487

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 437 SSGIPQLKAISLLLHRRWVR 378
           S G+P+LKA SLL  R W +
Sbjct: 8   SGGLPRLKAKSLLAQRNWAK 27


>08_02_0893 + 22327485-22327671,22327756-22328627
          Length = 352

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 303 GSQIKDRCQIRGNSSSKHQLPLLLLPDPASVE*Q 404
           G+++  R Q R  +  + + P LL+PDP +V+ Q
Sbjct: 305 GAELLRRVQQRRRADERGRQPALLVPDPQAVQRQ 338


>08_02_0482 - 17643603-17643955,17644024-17646604
          Length = 977

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 319 TVARSGATAAANINYLYYYFRTQRRWSNNDIA 414
           TVA +G        +  + +R+QRRWS  D A
Sbjct: 611 TVAVAGVILLLGAAWFAHRYRSQRRWSTEDAA 642


>08_02_1457 + 27260841-27260965,27261126-27261246,27263455-27263543,
            27263776-27263860,27263970-27264074,27264446-27264527,
            27264573-27264686,27265029-27265330,27265519-27266114,
            27266216-27266376,27266489-27266592,27266697-27266856,
            27266942-27267105,27267213-27267545,27267640-27267930,
            27268276-27268359,27268430-27268563,27268665-27268892,
            27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 355  INYLYYYFRTQRRWSNNDIAFS*GMPEDLPGNTRIQPRMWQ 477
            ++Y   Y R+   W N  +    G PE    +    P+ WQ
Sbjct: 1004 VDYAEIYQRSSLYWENRQLIDDLGKPEPNTEDLHFPPKYWQ 1044


>01_06_0052 - 25994156-25994485,25996861-25996878,25997668-25997880
          Length = 186

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 446 VTPEFNPVCGSDNQTYS 496
           + PEFNP+ GSD   YS
Sbjct: 21  LVPEFNPIIGSDAARYS 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,245,594
Number of Sequences: 37544
Number of extensions: 250164
Number of successful extensions: 451
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)