Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G04
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    35   0.032
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    35   0.032
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    32   0.22 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    31   0.52 
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical ...    28   3.6  
AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical ...    28   3.6  
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    28   4.8  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 19/31 (61%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 440 CP-VTPEFNPVCGSDNQTYSNPGRLTCAQAC 529
           CP  T EF  VCGSD +TYSN  RL  A AC
Sbjct: 465 CPSCTDEFKEVCGSDGKTYSNECRLQNA-AC 494


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 19/31 (61%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 440 CP-VTPEFNPVCGSDNQTYSNPGRLTCAQAC 529
           CP  T EF  VCGSD +TYSN  RL  A AC
Sbjct: 473 CPSCTDEFKEVCGSDGKTYSNECRLQNA-AC 502


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 416 SVEECLRTCPVTPEFNPVCGSDNQTYSN 499
           S E+C  T P   E+NPVC    QT++N
Sbjct: 115 SQEKCSCTAPCPTEWNPVCDKKGQTHAN 142



 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +2

Query: 437 TCPVTPEFNPVC---GSDNQTYSNPGRLTCAQ 523
           TC   PE +PVC   G    TYSN     CAQ
Sbjct: 24  TCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQ 55


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 440 CPVTPEFNPVCGSDNQTYSNPGRLTCAQ 523
           C       PVCG+DN TY+N   L C Q
Sbjct: 19  CDCPSVIRPVCGTDNVTYNNLCFLRCVQ 46



 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 419 VEECLRTCPVTPEFNPVCGSDNQTYSN 499
           V+EC   CP   E++PVC S+ Q   N
Sbjct: 865 VKECNNACP--KEYSPVCASNGQNIVN 889


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 416 SVEECLRTCPVTPEFNPVCGSDNQ-TYSNPGRLTCA 520
           ++E C   C     FNPVC  D++ T+ +P    CA
Sbjct: 441 ALETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCA 476


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 416 SVEECLRTCPVTPEFNPVCGSDNQTYSNPGRLTCA 520
           S+ +  ++C   P+  P C     TY+ P + +C+
Sbjct: 21  SIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCS 55


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 416 SVEECLRTCPVTPEFNPVCGSDNQTYSNPGRLTCA 520
           S+ +  ++C   P+  P C     TY+ P + +C+
Sbjct: 21  SIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCS 55


>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 3   TSLYRATKIDHIHFLNYYNLKWISCAQFLFWV 98
           T L   T I HIHF ++  +  I C   + WV
Sbjct: 478 TFLPHKTIIPHIHFTSFQQVAVIICLSLIIWV 509


>AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.5 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 416 SVEECLRTCPVTPEFNPVCGSDNQTYSNPGRLTCA 520
           S+ +  ++C   P+  P C     TY+ P + +C+
Sbjct: 21  SIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCS 55


>AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.4 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 416 SVEECLRTCPVTPEFNPVCGSDNQTYSNPGRLTCA 520
           S+ +  ++C   P+  P C     TY+ P + +C+
Sbjct: 21  SIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCS 55


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 416 SVEECLRTCPVTPEFNPVCGSDNQTYSNPGRLTCA 520
           S  E  ++C   P   P C     TY+ P + +C+
Sbjct: 23  STREKRQSCGCAPRVQPSCSCQQTTYAQPPQYSCS 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,280,173
Number of Sequences: 27780
Number of extensions: 214357
Number of successful extensions: 468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)