Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G02
         (194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   1.8  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   1.8  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    24   3.2  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    23   4.2  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    23   5.6  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    23   5.6  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    23   7.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    23   7.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    22   9.7  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    22   9.7  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    22   9.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    22   9.7  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    22   9.7  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    22   9.7  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 146 LGGAYVFINVTDVFFSDDWNRGFHQ 72
           LG  Y  INV   +F ++W  GFH+
Sbjct: 136 LGKTYGNINV---YFDEEWLNGFHE 157


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 33  ADVTDLIAASQLGLMETSIPIVTKEDVSDIYKYVCTAKN 149
           AD  DL+   +LG +E  +P V  ++ S +  Y+ +  N
Sbjct: 204 ADAIDLL--QELGAIEKVVPFVELDNASRVCLYITSCVN 240


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 113 DVFFSDDWNRGFHQ 72
           D+F S DW RG  Q
Sbjct: 178 DIFLSHDWPRGIEQ 191


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 105 EDVSDIYKYVCTAKNAAVDEEVVLVE 182
           ED+ D Y     A+N A   +VV+VE
Sbjct: 213 EDIPDFYVDGPIARNRAFHNDVVIVE 238


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 96  VTKEDVSDIYKYVC 137
           V+ +D SD++ YVC
Sbjct: 382 VSSDDYSDLFSYVC 395


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 52  SPHHSWA*WKPLFQSSLKKTSVTFI 126
           S  ++W+ WK L+  +L  + ++F+
Sbjct: 447 SAAYAWSQWKGLYNLTLNMSYISFV 471


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 106 SLVTIGIEVSIRPSCDAAIKSVTSALG 26
           S+  I + +SI P    A+ S+T A+G
Sbjct: 313 SIYAISLGISIIPESLIAVLSITMAMG 339


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 30  NADVTDLIAASQLGLMETSIPIVTKEDVSDIYKYVCTAK 146
           N D+  L    Q G  E     +  ED+ + ++Y+C+ K
Sbjct: 772 NEDIASLQCVLQFGSSER----IHLEDIQNSHRYLCSLK 806


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 126 KYVCTAKNAAVDEEVVLVEY 185
           KY CT K+  + +++  VEY
Sbjct: 546 KYACTPKSWNISDDLGQVEY 565


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
 Frame = +3

Query: 3   KKRLSGADPNADVTDLIAASQLGLME---TSIP----IVTKEDVSDIYKYVCTAKNAAVD 161
           ++ LSGA  N D  D ++ S + + +   + +P    I+T+    ++ K    ++++++ 
Sbjct: 226 REELSGATTNCDKLDTLSKSIINIFDYLLSHLPESWSIITEHMAQELTKATYVSQSSSIS 285

Query: 162 EE 167
            E
Sbjct: 286 SE 287


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 79  SIRPSCDAAIKSVTSALGS 23
           S+RP     IKS+TSA+ +
Sbjct: 214 SVRPLLSLFIKSITSAISA 232


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 12  LSGADPNADVTDLIAASQLGLMETSIPIVTKEDVSDI 122
           L   DP A+V   +  + L + E  +   +KE+  D+
Sbjct: 549 LEDIDPRANVVLNVGPNMLSVGEAPVESTSKEEDKDV 585


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 194 LDLILYQNYLFVDRCV 147
           LD  +YQ  LFV +CV
Sbjct: 262 LDSFVYQCLLFVGKCV 277


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 12  LSGADPNADVTDLIAASQLGLMETSIPIVTKEDVSD 119
           LSG DP      ++     G++E+  P VT   V D
Sbjct: 57  LSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGD 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,697
Number of Sequences: 5004
Number of extensions: 9385
Number of successful extensions: 33
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)