Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G02
         (194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608...    29   0.69 
08_01_0465 + 4099721-4100556,4101505-4103614                           27   2.8  
02_05_0307 + 27746466-27746544,27746648-27746920,27747034-27747311     25   6.4  
01_05_0541 - 23078460-23078597,23078745-23078903,23079264-230793...    25   6.4  
01_05_0520 + 22902554-22902661,22902848-22902968,22903288-22903922     25   6.4  
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           25   8.5  
06_03_0630 + 22926652-22928133                                         25   8.5  
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879...    25   8.5  

>07_01_0784 +
           6083477-6083653,6086052-6086238,6086672-6086844,
           6087520-6087678,6088677-6088817,6088880-6088941,
           6089120-6089255,6091142-6091236,6091333-6091448,
           6091538-6091667,6091757-6091811,6091889-6091930,
           6092534-6092656
          Length = 531

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 57  ASQLGLMETSIPIVTKEDVSDIYKYVCTAKNAAVDEE 167
           A+ L   ET   +++  D SD+ +Y  T   AA+D E
Sbjct: 307 ATLLSHHETKEKVLSYSDASDVLRYAFTMTEAAIDHE 343


>08_01_0465 + 4099721-4100556,4101505-4103614
          Length = 981

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 118  SLTSSLVTIGIEVSIRPSCDAAIKSVTSALGSAPD 14
            +L SSL  I + +  R +CDA ++   +AL  A D
Sbjct: 926  NLPSSLKRIIVVICCRDACDAEVEEAQAALEHAAD 960


>02_05_0307 +
          27746466-27746544,27746648-27746920,27747034-27747311
          Length = 209

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 9  RLSGADPNADVTDLIA 56
          RLSGADPNA V  + A
Sbjct: 18 RLSGADPNAGVVTMAA 33


>01_05_0541 -
           23078460-23078597,23078745-23078903,23079264-23079386,
           23079839-23080363,23081240-23081421,23084977-23085072,
           23085290-23085485
          Length = 472

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 66  LGLMETSIPIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE 182
           L  +E  I + TK+D  + ++   TA ++  D E+VL +
Sbjct: 236 LNSVEAVIQVFTKDDSDNPHRVRFTAFSSGFDHEIVLYD 274


>01_05_0520 + 22902554-22902661,22902848-22902968,22903288-22903922
          Length = 287

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 51  IAASQLGLMETSIPIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 191
           I A    ++ TSIP +  E+V D  K +  A    V E +    YE+
Sbjct: 70  IQAHVFDVLRTSIPKLALEEVFDKKKEIAEALEEEVAEAMAPYGYEV 116


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +3

Query: 45  DLIAASQLGLMETSIPIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE 182
           + + A  +  +E +I +   E  +D ++   TA+ A +DE+VVL++
Sbjct: 244 EFVFAHLIFAVEATIAVRVIEGSTD-FRARLTARTAGIDEDVVLLD 288


>06_03_0630 + 22926652-22928133
          Length = 493

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 9   RLSGADPNADVTDLIAASQLGLMETSIPIVTKEDVSD 119
           RL  + P A VT   A S   LM  S+P    EDV D
Sbjct: 33  RLMASAPAARVTFSTAVSAHRLMFPSLPSPAGEDVDD 69


>05_06_0277 +
           26885621-26886064,26886148-26886317,26887038-26887941,
           26888544-26888575,26888862-26888928,26889116-26889173,
           26889329-26889421,26890366-26890480,26890847-26890894,
           26891012-26891057,26891161-26891231,26891865-26891870,
           26891991-26892038,26892439-26892488,26892892-26893154
          Length = 804

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 18  GADPNADVTDLIAASQLGLMETSIPIVTKEDVSDIYKYVCTAKNAAV 158
           GADP A V   I A   G       +V      D++   CT + AA+
Sbjct: 108 GADPAAGVGPAIGAGARGYKAAVELVVHGRCPLDLHGLPCTVRKAAI 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,240,933
Number of Sequences: 37544
Number of extensions: 57666
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)