Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G02
         (194 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078)                     27   3.2  
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)                    27   3.2  
SB_25692| Best HMM Match : I-set (HMM E-Value=2e-20)                   26   4.2  
SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       26   4.2  

>SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078)
          Length = 432

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 6   KRLSGADPNADVTDLIAASQ---LGLMETSIPIVTKEDVSDIYKYVCTAK 146
           +R+ G  P       +AA+    LG + + I + T+E++ D  KYV TAK
Sbjct: 50  RRVPGLLPYTQYQFAVAANNSVGLGALSSPILVTTREEIPDAPKYV-TAK 98


>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
          Length = 514

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 6   KRLSGADPNADVTDLIAASQ---LGLMETSIPIVTKEDVSDIYKYVCTAK 146
           +R+ G  P       +AA+    LG + + I + T+E++ D  KYV TAK
Sbjct: 177 RRVPGLLPYTQYQFAVAANNSVGLGALSSPILVTTREEIPDAPKYV-TAK 225


>SB_25692| Best HMM Match : I-set (HMM E-Value=2e-20)
          Length = 104

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 93  IVTKEDVSDIYKYVCTAKNA 152
           I+ K   SDI +Y CTA+NA
Sbjct: 71  ILEKVSSSDIGRYTCTARNA 90


>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 48  LIAASQLGLMETSIPIVTKEDVSDIYKYVCTAKNAAVDEEVV 173
           +I+  ++ +  T   ++     SD  +YVCTA+N   ++  V
Sbjct: 271 IISGDRVSVTVTGSLVIVNSRSSDSGEYVCTARNLLGEDSAV 312



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 93  IVTKEDVSDIYKYVCTAKNA 152
           I+ K   SDI +Y CTA+NA
Sbjct: 729 ILEKVSSSDIGRYTCTARNA 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,875,759
Number of Sequences: 59808
Number of extensions: 65310
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 16,821,457
effective HSP length: 43
effective length of database: 14,249,713
effective search space used: 299243973
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)